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[190629_at] transmemebrane protein

Description K06C4.9 /REP_DB=WormBase Gene ID /WP=CE11818 /TR=Q9GYH3 /GB=AAF98229.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=transmemebrane protein
Cluster 6grp_high1_10_10 > 20      4grp_high_8_8 > 12      6grp_total > 26      4grp_total > 28      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 122
1 2 3 4 range
A 57.7
(-1.5)
P 		69.3
(3)
P 		54
(-3)
P 		58.3
(-1.3)
A 		15
B 93.3
(3)
P 		67.1
(1.2)
P 		4
(-3)
A 		73
(1.6)
P 		89
C 64.9
(-1.3)
P 		62.6
(-1.5)
P 		41.5
(-3)
A 		125.9
(3)
P 		84
avr 72
(1.4) 		66.3
(0.8) 		33.2
(-3) 		85.7
(3) 		53

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 78
1 2 3 4 5 6 range
A 86.1
(3)
P 		64.8
(-0.6)
P 		79.5
(1.9)
P 		68.9
(0.1)
P 		57
(-2)
P 		51
(-3)
P 		35
B 87.8
(3)
P 		71.8
(0.9)
P 		84.4
(2.5)
P 		71.8
(0.9)
A 		42.6
(-3)
P 		58.5
(-0.9)
P 		45
C 75.3
(2.6)
P 		80.3
(3)
P 		19.2
(-2.2)
A 		9.9
(-3)
A 		26.7
(-1.6)
A 		61
(1.4)
P 		70
avr 83.1
(3) 		72.3
(1.4) 		61
(-0.2) 		50.2
(-1.8) 		42.1
(-3) 		56.8
(-0.8) 		41
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 29
1 2 3 4 range
A 21
(3)
P 		15
(0.1)
P 		14.1
(-0.3)
P 		8.5
(-3)
A 		13
B 29.8
(3)
P 		16.6
(0.3)
P 		0.9
(-3)
A 		15.5
(0)
P 		29
C 21.5
(3)
P 		18
(0)
P 		14.5
(-3)
A 		21.2
(2.7)
P 		7
avr 24.1
(3) 		16.5
(-0.2) 		9.8
(-3) 		15.1
(-0.8) 		14

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 29
1 2 3 4 5 6 range
A 15.9
(-1)
P 		23.1
(3)
P 		17.3
(-0.3)
P 		17.5
(-0.1)
P 		17.2
(-0.3)
P 		12.4
(-3)
P 		11
B 30.6
(3)
P 		23.9
(-0)
P 		20.5
(-1.6)
P 		19
(-2.2)
A 		17.3
(-3)
P 		21.8
(-1)
P 		13
C 27.9
(3)
P 		24.5
(2.2)
P 		4.9
(-2.3)
A 		2
(-3)
A 		8.6
(-1.5)
A 		20.4
(1.3)
P 		26
avr 24.8
(3) 		23.8
(2.5) 		14.2
(-2.3) 		12.8
(-3) 		14.4
(-2.2) 		18.2
(-0.3) 		12
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 190629_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12098
Sequence Type Exemplar sequence
Representative Public ID K06C4.9 NCBI
Target Description K06C4.9 /REP_DB=WormBase Gene ID /WP=CE11818 /TR=Q9GYH3 /GB=AAF98229.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=transmemebrane protein
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072899(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072899 NCBI Caenorhabditis elegans K06C4.9 (K06C4.9) mRNA, complete cds. 11/11 None
K06C4.9 ENSEMBL cdna:known chromosome:CEL140:V:8904926:8907951:1 gene:K06C4.9 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000018199 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:8901886-8907952(+) 100.0 100.0
Public Domain and Genome References
Gene Title transmemebrane protein
Ensembl K06C4.9
Entrez Gene 259953 Entrez gene
SwissProt Q9GYH3 EMBL-EBI
WormBase CE29506 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
7186 G-protein coupled receptor protein signaling pathway inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
16021 integral to membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
1584 rhodopsin-like receptor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAL08039 Hypothetical protein K06C4.9 [Caenorhabditis elegans] ref|NP_505300.1| K06C4.9 [Caenorhabditis elegans] 0.0
blast T30050 hypothetical protein K06C4.9 - Caenorhabditis elegans 0.0
blast CAE72046 Hypothetical protein CBG19128 [Caenorhabditis briggsae] 1.0E-135
Protein Domains
Database ID Description E-Value
Pfam IPR000276 EMBL-EBI Rhodopsin-like GPCR superfamily 6.8E-11
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_505300.1 8 93-115,152-174,187-209,234-256,277-299,319-341,377-399,414-436
K06C4.9 8 93-115,152-174,187-209,234-256,277-299,319-341,377-399,414-436
Sequence
Target Sequence 
>C. ELEGANS:190629_AT
tttcaatctcgttcaatgctccaagattcttagaatttacggccgatctatccactggtg
ttgtcaacatgggactatcccatagtgcaaataacacgtggtatttctatttatattatg
gaattcgttcaatattttttgatgcattaataccttttgctatcatatcagtgacaaata
ttcaagttatccaacaacttcacaaatcaaacgaagaaagaaaattactaacaacgcaac
aacaaaaagaaaaaagaactacaacaatgcttttggtaatggtaattctgtatgcaactt
gccatttctttaatacaactctcaagtttatcaatatggtttccaaaacttatgctcaat
tccggtttcccgtaattcgagtcattcatcacatatcaaatctactcctggtaatatatt
cagcttcaacagtttttatttatcttattttctcaacaaaatatcgaaaagttctttcta
catgtgttact

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTTCAATCTCGTTCAATGCTCCAAG 331 673 1853 Antisense
GATTCTTAGAATTTACGGCCGATCT 607 429 1877 Antisense
GCCGATCTATCCACTGGTGTTGTCA 239 285 1894 Antisense
GGTGTTGTCAACATGGGACTATCCC 320 499 1909 Antisense
AATACCTTTTGCTATCATATCAGTG 222 173 2001 Antisense
ATGGTAATTCTGTATGCAACTTGCC 294 51 2131 Antisense
TGCAACTTGCCATTTCTTTAATACA 645 575 2145 Antisense
GTTTCCAAAACTTATGCTCAATTCC 394 451 2191 Antisense
TCCGGTTTCCCGTAATTCGAGTCAT 689 593 2213 Antisense
ATCACATATCAAATCTACTCCTGGT 644 27 2240 Antisense
AAAAGTTCTTTCTACATGTGTTACT 172 133 2319 Antisense
Sequence Source Affymetrix Proprietary Database