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[190627_at] Acyl-coA dehydrogenase

Description K05F1.3 /REP_DB=WormBase Gene ID /WP=CE02807 /TR=Q21243 /GB=AAA68712.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation /DEF=Acyl-coA dehydrogenase
Cluster 6grp_total > 88      4grp_total > 43      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 91
1 2 3 4 range
A 81.5
(0)
A 		122.2
(3)
A 		43.5
(-2.7)
A 		39.9
(-3)
A 		82
B 65.1
(0.7)
A 		76.3
(3)
A 		54.9
(-1.5)
A 		47.6
(-3)
A 		29
C 83.7
(-1.2)
A 		131
(3)
A 		63.4
(-3)
A 		93.7
(-0.3)
A 		68
avr 76.8
(-0.5) 		109.8
(3) 		53.9
(-3) 		60.4
(-2.3) 		56

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 523
1 2 3 4 5 6 range
A 70.9
(-2.7)
A 		62.3
(-2.8)
A 		50
(-3)
A 		113.9
(-2.2)
A 		290.1
(-0.1)
P 		538.9
(3)
P 		489
B 58.8
(-3)
A 		80.3
(-2.7)
A 		78.7
(-2.8)
A 		82.1
(-2.7)
A 		354.8
(0.5)
P 		570.9
(3)
P 		512
C 64
(-3)
A 		80.6
(-2.8)
A 		80.9
(-2.8)
A 		62.1
(-3)
A 		291.5
(-0.3)
P 		573.3
(3)
P 		511
avr 64.6
(-3) 		74.4
(-2.9) 		69.9
(-2.9) 		86
(-2.7) 		312.1
(-0) 		561
(3) 		496
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 32
1 2 3 4 range
A 29.7
(3)
A 		26.5
(2.2)
A 		11.4
(-1.6)
A 		5.8
(-3)
A 		24
B 20.8
(3)
A 		18.8
(1.9)
A 		12.7
(-1.5)
A 		10.1
(-3)
A 		11
C 27.7
(0.3)
A 		37.7
(3)
A 		22.1
(-1.3)
A 		15.8
(-3)
A 		22
avr 26.1
(2.4) 		27.7
(3) 		15.4
(-1.3) 		10.6
(-3) 		17

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 202
1 2 3 4 5 6 range
A 13.1
(-2.9)
A 		22.2
(-2.4)
A 		10.9
(-3)
A 		28.9
(-2.1)
A 		87.5
(0.8)
P 		131.2
(3)
P 		120
B 20.5
(-3)
A 		26.7
(-2.8)
A 		19.1
(-3)
A 		21.7
(-2.9)
A 		144.1
(0.9)
P 		212.9
(3)
P 		194
C 23.7
(-2.6)
A 		24.6
(-2.6)
A 		20.6
(-2.7)
A 		12.5
(-3)
A 		94.3
(-0.3)
P 		191.9
(3)
P 		179
avr 19.1
(-2.9) 		24.5
(-2.7) 		16.9
(-3) 		21
(-2.8) 		108.6
(0.4) 		178.7
(3) 		162
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 190627_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5191
Sequence Type Exemplar sequence
Representative Public ID K05F1.3 NCBI
Target Description K05F1.3 /REP_DB=WormBase Gene ID /WP=CE02807 /TR=Q21243 /GB=AAA68712.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation /DEF=Acyl-coA dehydrogenase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062741(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062741 NCBI Caenorhabditis elegans K05F1.3 (K05F1.3) mRNA, complete cds. 11/11 None
SNAP00000031243 ENSEMBL cdna:SNAP chromosome:CEL140:II:5794520:5796097:1 11/11 None
GENEFINDER00000031257 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:5794520:5796097:1 11/11 None
K05F1.3 ENSEMBL cdna:known chromosome:CEL140:II:5794477:5796097:1 gene:K05F1.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:5794516-5796094(+) 100.0 100.0
Public Domain and Genome References
Gene Title Acyl-coA dehydrogenase
Ensembl K05F1.3
Entrez Gene 173979 Entrez gene
SwissProt Q21243 EMBL-EBI
WormBase CE02807 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6118 electron transport inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3995 acyl-CoA dehydrogenase activity inferred from electronic annotation QuickGO AmiGO
16491 oxidoreductase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAA68712 Hypothetical protein K05F1.3 [Caenorhabditis elegans] ref|NP_495142.1| K05F1.3 [Caenorhabditis elegans] 0.0
blast CAE59190 Hypothetical protein CBG02501 [Caenorhabditis briggsae] 0.0
blast AAB52493 Hypothetical protein T08G2.3 [Caenorhabditis elegans] ref|NP_510788.1| T08G2.3 [Caenorhabditis elegans] sp|Q22347|ACADM_CAEEL Probable acyl-CoA dehydrogenase, medium-chain specific, mitochondrial precursor (MCAD) 0.0
Protein Families
Method ID Description E-Value
ec ACDM_HUMAN (P11310) Acyl-CoA dehydrogenase, medium-chain specific, mitochondrial precursor (EC 1.3.99.3) (MCAD) 1.0E-163
Protein Domains
Database ID Description E-Value
Pfam IPR006090 EMBL-EBI Acyl-CoA dehydrogenase, C-terminal 1.2E-67
Pfam IPR006091 EMBL-EBI Acyl-CoA dehydrogenase, central domain 5.6E-60
Pfam IPR006092 EMBL-EBI Acyl-CoA dehydrogenase, N-terminal 1.8E-26
Sequence
Target Sequence 
>C. ELEGANS:190627_AT
atttgacacgtcctcaagttgctgccagtgcagttggtctggcatggagatgtcttgatg
aatcaacaaaatatgcaatggaaagacatgcatttggaaccccaattgccaatcatcaag
gagttcaattcatgattgcggatatggccatcaaccttgaattgtctcgtttgttcacat
atcgtgccgcagctgaagttgactcttatggtgtctcttcttacaatgcatcaattgcca
aatgctttgctgccgatactgcaaatgtagcagctaccaatgcttgtcagatcttcggag
gtgctggattcaactgcgaatatcctgtggaaaaactgatgcgtgatgcaaagatctatc
aaatctacgagggaacatctcaaattcaacgtatggtcattggtcgcacactgttccaga
a

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATTTGACACGTCCTCAAGTTGCTGC 31 19 797 Antisense
GTTGCTGCCAGTGCAGTTGGTCTGG 138 439 814 Antisense
TGGAACCCCAATTGCCAATCATCAA 605 545 891 Antisense
GATTGCGGATATGGCCATCAACCTT 599 433 930 Antisense
GTCTCGTTTGTTCACATATCGTGCC 197 471 960 Antisense
ATCGTGCCGCAGCTGAAGTTGACTC 341 35 977 Antisense
GACTCTTATGGTGTCTCTTCTTACA 519 373 997 Antisense
CCAAATGCTTTGCTGCCGATACTGC 609 275 1034 Antisense
TACCAATGCTTGTCAGATCTTCGGA 41 651 1071 Antisense
CGGAGGTGCTGGATTCAACTGCGAA 447 243 1092 Antisense
TCATTGGTCGCACACTGTTCCAGAA 377 619 1193 Antisense
Sequence Source Affymetrix Proprietary Database