[Home] | [Total List]

[190626_s_at] glutamate dehydrogenase

Description ZK829.4 /REP_DB=WormBase Gene ID /WP=CE06652 /TR=Q23621 /GB=CAA98074.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=glutamate dehydrogenase
Cluster 6grp_highest_10_10 > 03      6grp_high1_10_10 > 21      4grp_highest_8_8 > 14      4grp_high_8_8 > 14      6grp_highest_nonorm > 07      6grp_total > 32      4grp_total > 09      6grp_highest_sub > De      6grp_high1_sub > 03      6grp_total_sub > Hat      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 15513
1 2 3 4 range
A 18520
(-3)
P 		21284.1
(-1.9)
P 		21205.5
(-1.9)
P 		33696
(3)
P 		15176
B 18712.7
(-3)
P 		19983
(-2)
P 		20787.1
(-1.3)
P 		26198
(3)
P 		7485
C 18183.5
(-3)
P 		19539.8
(-2)
P 		18997.1
(-2.4)
P 		26694.6
(3)
P 		8511
avr 18472.1
(-3) 		20269
(-2) 		20329.9
(-1.9) 		28862.9
(3) 		10391

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 15755
1 2 3 4 5 6 range
A 20841.6
(3)
P 		17270.5
(1.3)
P 		18441.4
(1.9)
P 		14553.9
(0.1)
P 		10920.6
(-1.6)
P 		7908.2
(-3)
P 		12933
B 18054
(2.8)
P 		17311.1
(2.4)
P 		18466.1
(3)
P 		14720.7
(1)
P 		9793.3
(-1.6)
P 		7095.6
(-3)
P 		11371
C 16512.7
(1)
P 		17313.1
(1.3)
P 		21844.1
(3)
P 		13235.5
(-0.3)
P 		11674.9
(-0.9)
P 		6089.6
(-3)
P 		15755
avr 18469.4
(2.5) 		17298.2
(1.9) 		19583.9
(3) 		14170
(0.4) 		10796.3
(-1.2) 		7031.1
(-3) 		12553
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2242
1 2 3 4 range
A 6743.1
(3)
P 		4620.2
(-3)
P 		5543.5
(-0.4)
P 		4932.4
(-2.1)
P 		2123
B 5967.3
(3)
P 		4935.3
(-2.4)
P 		4816.9
(-3)
P 		5582.8
(1)
P 		1150
C 6019.3
(1.3)
P 		5617.8
(0.2)
P 		6621.1
(3)
P 		4501.1
(-3)
P 		2120
avr 6243.2
(3) 		5057.8
(-2.7) 		5660.5
(0.2) 		5005.4
(-3) 		1238

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 4357
1 2 3 4 5 6 range
A 3842
(-0.3)
P 		6142.2
(3)
P 		4016.2
(-0)
P 		3691.2
(-0.5)
P 		3295.4
(-1.1)
P 		1925.4
(-3)
P 		4217
B 6281.9
(3)
P 		5762.1
(2.1)
P 		4484.1
(0)
P 		3899
(-0.9)
P 		3978.9
(-0.8)
P 		2645.9
(-3)
P 		3636
C 6120.5
(3)
P 		5282.8
(1.8)
P 		5559.7
(2.2)
P 		2661.7
(-2.1)
P 		3777.8
(-0.4)
P 		2038.5
(-3)
P 		4082
avr 5414.8
(2.5) 		5729
(3) 		4686.7
(1.2) 		3417.3
(-0.9) 		3684
(-0.5) 		2203.3
(-3) 		3526
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 190626_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9251
Sequence Type Exemplar sequence
Representative Public ID ZK829.4 NCBI
Target Description ZK829.4 /REP_DB=WormBase Gene ID /WP=CE06652 /TR=Q23621 /GB=CAA98074.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=glutamate dehydrogenase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069866(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069866 NCBI Caenorhabditis elegans ZK829.4 (ZK829.4) mRNA, complete cds. 11/11 None
SNAP00000012763 ENSEMBL cdna:SNAP chromosome:CEL140:IV:11953222:11955184:1 11/11 None
GENEFINDER00000012778 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:11953222:11955184:1 11/11 None
ZK829.4.5 ENSEMBL cdna:known chromosome:CEL140:IV:11953213:11955514:1 gene:ZK829.4 11/11 None
ZK829.4.2 ENSEMBL cdna:known chromosome:CEL140:IV:11953213:11955514:1 gene:ZK829.4 11/11 None
ZK829.4.1 ENSEMBL cdna:known chromosome:CEL140:IV:11953217:11955514:1 gene:ZK829.4 11/11 A 
ZK829.4.4 ENSEMBL cdna:known chromosome:CEL140:IV:11953219:11955957:1 gene:ZK829.4 11/11 None
ZK829.4.3 ENSEMBL cdna:known chromosome:CEL140:IV:11953219:11955514:1 gene:ZK829.4 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:11953227-11955190(+) 100.0 100.0
Public Domain and Genome References
Gene Title glutamate dehydrogenase
Ensembl ZK829.4
Entrez Gene 178130 Entrez gene
SwissProt Q23621 EMBL-EBI
WormBase CE06652 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATGENOME1:15594_S_AT glutamate dehydrogenase 2 (GDH2) at
ATH1-121501:250580_AT glutamate dehydrogenase 2 (GDH2) at
DROSOPHILA_2:1640835_A_AT Glutamate dehydrogenase dm
DROSGENOME1:154218_AT Glutamate dehydrogenase dm
CHICKEN:GGA.16450.1.S1_AT glutamate dehydrogenase 1 gga
HG-U133_PLUS_2:200947_S_AT glutamate dehydrogenase 1 hs
HG-FOCUS:200947_S_AT glutamate dehydrogenase 1 hs
HG-U133A_2:200947_S_AT glutamate dehydrogenase 1 hs
HG-U133A:200947_S_AT glutamate dehydrogenase 1 hs
HG-U133_PLUS_2:200946_X_AT glutamate dehydrogenase 1 hs
HG-U133A_2:200946_X_AT glutamate dehydrogenase 1 hs
HG-U133A:200946_X_AT glutamate dehydrogenase 1 hs
HU35KSUBC:RC_N57779_AT glutamate dehydrogenase 1 hs
HU35KSUBC:RC_AA122345_F_AT glutamate dehydrogenase 1 hs
HU35KSUBD:RC_T86978_S_AT glutamate dehydrogenase 1 hs
HUGENEFL:X67491_F_AT glutamate dehydrogenase 1 hs
HUGENEFL:M20867_S_AT glutamate dehydrogenase 1 hs
U133_X3P:G4885280_3P_A_AT glutamate dehydrogenase 1 hs
U133_X3P:HS.77508.0.A1_3P_X_AT glutamate dehydrogenase 1 hs
U133_X3P:HS.77508.0.A1_3P_A_AT glutamate dehydrogenase 1 hs
U133_X3P:HS.327047.0.A1_3P_AT glutamate dehydrogenase 1 hs
U133_X3P:HS.272497.1.S1_3P_S_AT glutamate dehydrogenase 1 hs
HG-U133_PLUS_2:244802_AT glutamate dehydrogenase 1 hs
HG-U133B:244802_AT glutamate dehydrogenase 1 hs
HG-U95AV2:31691_G_AT glutamate dehydrogenase 1 hs
HG-U95AV2:37341_AT glutamate dehydrogenase 1 hs
HG-U95B:54199_AT glutamate dehydrogenase 1 hs
HG-U95D:79672_AT glutamate dehydrogenase 1 hs
HG-U95D:87180_AT glutamate dehydrogenase 1 hs
HG-U133_PLUS_2:232741_AT Glutamate dehydrogenase 1 hs
HG-U133B:232741_AT Glutamate dehydrogenase 1 hs
HU35KSUBC:RC_N63375_AT Glutamate dehydrogenase 1 hs
U133_X3P:HS.31330.0.S1_3P_X_AT Glutamate dehydrogenase 1 hs
U133_X3P:232741_3P_AT Glutamate dehydrogenase 1 hs
HG-U133_PLUS_2:232703_AT Glutamate dehydrogenase 1 hs
HG-U133B:232703_AT Glutamate dehydrogenase 1 hs
HG-U95C:58711_AT Glutamate dehydrogenase 1 hs
HG-U95E:78904_AT Glutamate dehydrogenase 1 hs
HU35KSUBB:RC_T77866_AT Glutamate dehydrogenase 1 hs
MOE430A:1416209_AT glutamate dehydrogenase 1 mm
MOUSE430A_2:1416209_AT glutamate dehydrogenase 1 mm
MOUSE430_2:1416209_AT glutamate dehydrogenase 1 mm
MU11KSUBB:X57024_F_AT glutamate dehydrogenase 1 mm
MU11KSUBB:MSA.2314.0_F_AT glutamate dehydrogenase 1 mm
MG-U74AV2:92586_AT glutamate dehydrogenase 1 mm
MG-U74AV2:162364_F_AT glutamate dehydrogenase 1 mm
MOE430A:1448253_AT glutamate dehydrogenase 1 mm
MOUSE430A_2:1448253_AT glutamate dehydrogenase 1 mm
MOUSE430_2:1448253_AT glutamate dehydrogenase 1 mm
MU19KSUBA:TC23142_AT Glutamate dehydrogenase 1 (Glud1), mRNA mm
MU19KSUBB:TC30372_F_AT Glutamate dehydrogenase 1 (Glud1), mRNA mm
MU19KSUBB:TC30373_AT Glutamate dehydrogenase 1 (Glud1), mRNA mm
RN-U34:RC_AI179613_AT glutamate dehydrogenase 1 rn
RG-U34A:RC_AI179613_AT glutamate dehydrogenase 1 rn
RN-U34:RC_AI233216_AT glutamate dehydrogenase 1 rn
RG-U34A:RC_AI233216_AT glutamate dehydrogenase 1 rn
RAE230A:1370200_AT glutamate dehydrogenase 1 rn
RAT230_2:1370200_AT glutamate dehydrogenase 1 rn
RAE230A:1387878_AT glutamate dehydrogenase 1 rn
RAT230_2:1387878_AT glutamate dehydrogenase 1 rn
RN-U34:RC_AI137421_AT glutamate dehydrogenase 1 rn
RG-U34A:RC_AI137421_AT glutamate dehydrogenase 1 rn
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6520 amino acid metabolism inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
16491 oxidoreductase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA98074 Hypothetical protein ZK829.4 [Caenorhabditis elegans] ref|NP_502267.1| ZK829.4 [Caenorhabditis elegans] 0.0
blast CAE62153 Hypothetical protein CBG06199 [Caenorhabditis briggsae] 0.0
blast AAC19750 putative glutamate dehydrogenase [Haemonchus contortus] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR006096 EMBL-EBI Glu/Leu/Phe/Val dehydrogenase, C terminal 2.2E-108
Pfam IPR006097 EMBL-EBI Glu/Leu/Phe/Val dehydrogenase, dimerisation domain 6.8E-58
Sequence
Target Sequence 
>C. ELEGANS:190626_S_AT
ttcgacccattcactgagcttatgtacgagaagtgcgatatcttcgttccagctgcttgc
gaaaagtcgatccacaaggaaaatgctagccgcattcaagctaagatcatcgccgaggct
gccaacggaccaactaccccagctgctgacagaattcttcttgctcgtggagattgcctc
atcatcccagacatgtacgtcaactctggtggagttactgtttcctacttcgagtggttg
aagaatcttaaccatgtttcctacggacgtcttacattcaaatatgacgaggaagccaac
aagatgcttttggcctcggtccaagaatctctctccaaggccgtcggaaaggattgccca
gttgaaccaaatgctgctttcgctgccaagatcgctggagcttccgagaaagacatcgtt
cactctggactcgagtacacaatgcaacgctccggagaagccatcatccgcaccgctcac
aagtacaaccttggacttgatatccgtactgctgcc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTCGACCCATTCACTGAGCTTATGT 455 695 1045 Antisense
AAGTGCGATATCTTCGTTCCAGCTG 681 157 1075 Antisense
CTAAGATCATCGCCGAGGCTGCCAA 656 225 1145 Antisense
TGCTCGTGGAGATTGCCTCATCATC 453 579 1206 Antisense
GACATGTACGTCAACTCTGGTGGAG 355 369 1234 Antisense
TGGTGGAGTTACTGTTTCCTACTTC 297 553 1251 Antisense
TAACCATGTTTCCTACGGACGTCTT 648 637 1293 Antisense
TTGAACCAAATGCTGCTTTCGCTGC 684 703 1406 Antisense
GAAAGACATCGTTCACTCTGGACTC 323 357 1452 Antisense
TGCAACGCTCCGGAGAAGCCATCAT 49 577 1487 Antisense
TGGACTTGATATCCGTACTGCTGCC 149 549 1536 Antisense
Sequence Source Affymetrix Proprietary Database