[Home] | [Total List]

[190625_at] Yeast YEA4 like protein

Description C53B4.6 /REP_DB=WormBase Gene ID /WP=CE03092 /TR=Q18800 /GB=CAA92454.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=Yeast YEA4 like protein
Cluster 6grp_highest_10_10 > 72      6grp_high1_10_10 > 27      4grp_highest_8_8 > 62      4grp_high_8_8 > 18      6grp_highest_nonorm > 60      6grp_total > 27      4grp_total > 29      6grp_highest_sub > Cu      6grp_high1_sub > Cu      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 233
1 2 3 4 range
A 329.6
(1.6)
P 		271.6
(-0.7)
P 		212.7
(-3)
P 		363.8
(3)
P 		151
B 408.2
(3)
P 		356.6
(0.6)
P 		279.3
(-3)
P 		394.2
(2.3)
P 		129
C 444.1
(3)
P 		350.7
(0.6)
P 		211.5
(-3)
P 		352.3
(0.6)
P 		233
avr 394
(3) 		326.3
(0.5) 		234.5
(-3) 		370.1
(2.1) 		160

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 268
1 2 3 4 5 6 range
A 508.3
(3)
P 		330.4
(-2)
P 		375.7
(-0.7)
P 		308.9
(-2.6)
P 		295.8
(-3)
P 		327
(-2.1)
P 		213
B 510
(3)
P 		372
(-0.7)
P 		317.5
(-2.2)
P 		363.5
(-0.9)
P 		287.3
(-3)
P 		380.7
(-0.5)
P 		223
C 387.9
(1.1)
P 		457.7
(3)
P 		257.5
(-2.6)
P 		382.1
(0.9)
P 		242.1
(-3)
P 		399.4
(1.4)
P 		216
avr 468.7
(3) 		386.7
(0.5) 		316.9
(-1.7) 		351.5
(-0.6) 		275.1
(-3) 		369
(-0.1) 		194
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 94
1 2 3 4 range
A 120
(3)
P 		59
(-2.5)
P 		55.6
(-2.8)
P 		53.2
(-3)
P 		67
B 130.2
(3)
P 		88.1
(-0.9)
P 		64.7
(-3)
P 		84
(-1.2)
P 		66
C 147
(3)
P 		100.8
(-0.2)
P 		73.7
(-2)
P 		59.4
(-3)
P 		88
avr 132.4
(3) 		82.6
(-1.4) 		64.7
(-3) 		65.5
(-2.9) 		68

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 112
1 2 3 4 5 6 range
A 93.7
(-0.6)
P 		117.5
(3)
P 		81.8
(-2.5)
P 		78.3
(-3)
P 		89.3
(-1.3)
P 		79.6
(-2.8)
P 		39
B 177.4
(3)
P 		123.8
(-0.2)
P 		77.1
(-3)
P 		96.3
(-1.9)
P 		116.7
(-0.6)
P 		142
(0.9)
P 		100
C 143.8
(3)
P 		139.7
(2.7)
P 		65.5
(-3)
P 		76.8
(-2.1)
P 		78.3
(-2)
P 		133.7
(2.2)
P 		78
avr 138.3
(3) 		127
(1.9) 		74.8
(-3) 		83.8
(-2.1) 		94.8
(-1.1) 		118.4
(1.1) 		64
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 190625_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10349
Sequence Type Exemplar sequence
Representative Public ID C53B4.6 NCBI
Target Description C53B4.6 /REP_DB=WormBase Gene ID /WP=CE03092 /TR=Q18800 /GB=CAA92454.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=Yeast YEA4 like protein
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069161(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069161 NCBI Caenorhabditis elegans C53B4.6 (C53B4.6) mRNA, complete cds. 11/11 None
GENEFINDER00000003711 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:8984852:8986664:1 11/11 None
C53B4.6 ENSEMBL cdna:known chromosome:CEL140:IV:8984846:8986726:1 gene:C53B4.6 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000003709 5/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:8984857-8986670(+) 100.0 100.0
Public Domain and Genome References
Gene Title Yeast YEA4 like protein
Ensembl C53B4.6
Entrez Gene 183743 Entrez gene
SwissProt Q18800 EMBL-EBI
WormBase CE03092 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA92454 Hypothetical protein C53B4.6 [Caenorhabditis elegans] ref|NP_501562.1| C53B4.6 [Caenorhabditis elegans] 1.0E-171
blast CAE74081 Hypothetical protein CBG21736 [Caenorhabditis briggsae] 1.0E-156
blast CAE61502 Hypothetical protein CBG05401 [Caenorhabditis briggsae] 6.0E-58
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_501562.1 9 4-23,30-49,85-107,120-138,158-180,201-223,228-250,257-276,296-315
C53B4.6 9 4-23,30-49,85-107,120-138,158-180,201-223,228-250,257-276,296-315
GENEFINDER00000003711 9 4-23,30-49,85-107,120-138,158-180,201-223,228-250,257-276,296-315
Sequence
Target Sequence 
>C. ELEGANS:190625_AT
aataccaattcctccatttgtcgttgggttggctcttctttcttttgcactgattctcag
tgcatatttgggattatatcaagaaacattctatcaaaaacatggaaaacacaatgagga
gatgatgttttatgtgcatttcctctcaattcctttgtttgctttcgttggtgacgatat
ggttccagcattccatgccgcttactcaacaccttcatttgttattgctggattggatac
tgtagtcccatcggcatgggtgtatatttttgcaatttgcctattccaattcgcttgcac
aaaaggtgtctacatgctctccgccgtgacaacatctctaaacgtgacaatggtcctaac
tctccgaaaattcttttcgcttttgatctcatttatagtttttgaaaacgttttcaacat
gtttcacatcatcggtgccgcatttgttttcattggaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AATACCAATTCCTCCATTTGTCGTT 388 171 477 Antisense
CTTCTTTCTTTTGCACTGATTCTCA 335 221 511 Antisense
TTTTATGTGCATTTCCTCTCAATTC 701 675 604 Antisense
TCCTTTGTTTGCTTTCGTTGGTGAC 362 591 627 Antisense
GATTGGATACTGTAGTCCCATCGGC 472 435 707 Antisense
TTGCCTATTCCAATTCGCTTGCACA 302 701 753 Antisense
ACAAAAGGTGTCTACATGCTCTCCG 701 111 775 Antisense
TGACAATGGTCCTAACTCTCCGAAA 46 573 821 Antisense
AATTCTTTTCGCTTTTGATCTCATT 343 177 845 Antisense
ACATGTTTCACATCATCGGTGCCGC 685 105 893 Antisense
GGTGCCGCATTTGTTTTCATTGGAA 300 501 910 Antisense
Sequence Source Affymetrix Proprietary Database