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[190623_at] C-lectin binding domain

Description C33D9.2 /REP_DB=WormBase Gene ID /WP=CE03043 /TR=Q18373 /GB=CAA92283.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=C-lectin binding domain
Cluster 6grp_total > 92      4grp_total > 27      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 72
1 2 3 4 range
A 35.1
(-1)
A 		77.6
(3)
A 		13.6
(-3)
A 		55.1
(0.9)
A 		64
B 57.3
(-1.4)
A 		70.8
(3)
A 		52.4
(-3)
A 		63.3
(0.6)
A 		18
C 26.3
(-2.4)
A 		19.8
(-3)
A 		29.8
(-2.1)
A 		85.8
(3)
A 		66
avr 39.6
(-1.7) 		56.1
(1) 		31.9
(-3) 		68.1
(3) 		36

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 67
1 2 3 4 5 6 range
A 75.2
(3)
A 		9
(-3)
A 		44
(0.2)
A 		18.7
(-2.1)
A 		70.6
(2.6)
A 		9
(-3)
A 		66
B 43.9
(2.3)
A 		48.6
(3)
A 		36.3
(1.2)
A 		7.8
(-3)
A 		40
(1.7)
A 		8
(-3)
A 		41
C 10.2
(-2.8)
A 		39.2
(0.6)
A 		11.6
(-2.7)
A 		19.4
(-1.7)
A 		60
(3)
A 		8.7
(-3)
A 		51
avr 43.1
(1.3) 		32.3
(-0.1) 		30.6
(-0.3) 		15.3
(-2.2) 		56.9
(3) 		8.6
(-3) 		48
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 15
1 2 3 4 range
A 12.8
(1.2)
A 		16.8
(3)
A 		3.6
(-3)
A 		8.1
(-1)
A 		13
B 18.3
(3)
A 		17.5
(2.2)
A 		12.1
(-3)
A 		13.5
(-1.6)
A 		6
C 8.7
(-1)
A 		5.7
(-3)
A 		10.4
(0.2)
A 		14.5
(3)
A 		9
avr 13.3
(3) 		13.3
(3) 		8.7
(-3) 		12
(1.3) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 19
1 2 3 4 5 6 range
A 13.9
(0.7)
A 		3.2
(-2.7)
A 		9.6
(-0.7)
A 		4.7
(-2.2)
A 		21.3
(3)
A 		2.2
(-3)
A 		19
B 15.3
(2.6)
A 		16.2
(3)
A 		8.8
(-0.1)
A 		2.1
(-3)
A 		16.2
(3)
A 		3
(-2.6)
A 		14
C 3.8
(-2.7)
A 		12
(0.3)
A 		3
(-3)
A 		3.9
(-2.6)
A 		19.4
(3)
A 		2.9
(-3)
A 		17
avr 11
(0.1) 		10.5
(-0.1) 		7.1
(-1.4) 		3.6
(-2.7) 		19
(3) 		2.7
(-3) 		16
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 190623_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9269
Sequence Type Exemplar sequence
Representative Public ID C33D9.2 NCBI
Target Description C33D9.2 /REP_DB=WormBase Gene ID /WP=CE03043 /TR=Q18373 /GB=CAA92283.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=C-lectin binding domain
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069119(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069119 NCBI Caenorhabditis elegans C33D9.2 (C33D9.2) mRNA, complete cds. 11/11 None
SNAP00000033376 ENSEMBL cdna:SNAP chromosome:CEL140:IV:8796863:8798337:-1 11/11 None
GENEFINDER00000033387 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:8796863:8798337:-1 11/11 None
C33D9.2 ENSEMBL cdna:known chromosome:CEL140:IV:8796863:8798337:-1 gene:C33D9.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:8796868-8798343(-) 100.0 100.0
Public Domain and Genome References
Gene Title C-lectin binding domain
Ensembl C33D9.2
Entrez Gene 183158 Entrez gene
SwissProt Q18373 EMBL-EBI
WormBase CE03043 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA92283 Hypothetical protein C33D9.2 [Caenorhabditis elegans] ref|NP_501520.1| C33D9.2 [Caenorhabditis elegans] 0.0
blast AAT48616 Hypothetical protein F47F6.5 [Caenorhabditis elegans] ref|NP_493933.2| F47F6.5 [Caenorhabditis elegans] 8.0E-80
blast C88040 protein F47F6.5 [imported] - Caenorhabditis elegans 8.0E-80
Sequence
Target Sequence 
>C. ELEGANS:190623_AT
aagcctgggtgtcagtgccaaatcttgaagattattacgaaaatgggaaaggccacgcag
ctgtctatgtacaagatgcagcgtacaggcacgatgaacgtgttggttccatcatgatgt
ttgatcaaaattcggagcatcaagtgatatgtgagtacactccaccgatgaccatggctg
agatgtactatttggcacatcgatactctgaaatttatccgatacatgtgtacaaacatg
gtgctatcattccaacgcaaagttattacacaatcactcaattgcaaggaaaagaaatgt
acaatactcaagaactgaaggatgcatgtaagggagttggaaacattcttaatgtggaaa
gtttccccatcacggcaattgagcaagagttcgaggatgttaagccttatttgaaagatc
accaattttcacttgtggatgcttataaaaatgatggttgctcgagtggagactatt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAGCCTGGGTGTCAGTGCCAAATCT 18 149 473 Antisense
AATGGGAAAGGCCACGCAGCTGTCT 491 159 514 Antisense
GCCACGCAGCTGTCTATGTACAAGA 281 279 524 Antisense
GATGCAGCGTACAGGCACGATGAAC 391 413 547 Antisense
AACGTGTTGGTTCCATCATGATGTT 605 143 569 Antisense
GTGATATGTGAGTACACTCCACCGA 97 485 616 Antisense
ACTCCACCGATGACCATGGCTGAGA 383 97 631 Antisense
GTACTATTTGGCACATCGATACTCT 102 461 657 Antisense
AACATGGTGCTATCATTCCAACGCA 586 137 707 Antisense
TTTCCCCATCACGGCAATTGAGCAA 628 669 834 Antisense
GATGGTTGCTCGAGTGGAGACTATT 667 407 925 Antisense
Sequence Source Affymetrix Proprietary Database