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[190618_s_at]

Description C02E7.14 /REP_DB=WormBase Gene ID /WP=CE07851 /TR=O16440 /GB=AAC24171.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=reverse transcriptase
Cluster 6grp_total > 60      4grp_total > 19      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 73
1 2 3 4 range
A 1.9
(-2.9)
A 		10.5
(-1.2)
A 		1.2
(-3)
A 		31.8
(3)
A 		31
B 1.4
(-2.3)
A 		4.6
(3)
A 		1
(-3)
A 		3.6
(1.3)
A 		4
C 18.5
(-2.2)
A 		31.9
(-1)
A 		10.5
(-3)
A 		73.6
(3)
P 		63
avr 7.3
(-2.4) 		15.7
(-0.9) 		4.2
(-3) 		36.3
(3) 		32

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 38
1 2 3 4 5 6 range
A 13
(0.3)
A 		3.1
(-2.5)
A 		22.5
(2.9)
A 		22.6
(3)
A 		22.7
(3)
A 		1.3
(-3)
A 		21
B 22.2
(3)
A 		13.2
(0.4)
A 		1.6
(-3)
A 		5.9
(-1.7)
A 		1.5
(-3)
A 		12.3
(0.1)
A 		21
C 1.9
(-3)
A 		19.7
(-0.1)
A 		10.5
(-1.6)
A 		38.8
(3)
A 		2
(-3)
A 		2.2
(-3)
A 		37
avr 12.4
(-0.5) 		12
(-0.6) 		11.5
(-0.8) 		22.4
(3) 		8.7
(-1.8) 		5.3
(-3) 		17
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 12
1 2 3 4 range
A 0.7
(-2.5)
A 		2.3
(-0.3)
A 		0.3
(-3)
A 		4.7
(3)
A 		4
B 0.5
(-1)
A 		1.1
(3)
A 		0.2
(-3)
A 		0.8
(1)
A 		1
C 6.1
(-1.3)
A 		9.2
(0.8)
A 		3.7
(-3)
A 		12.4
(3)
P 		9
avr 2.4
(-1.7) 		4.2
(0.7) 		1.4
(-3) 		6
(3) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 8
1 2 3 4 5 6 range
A 2.4
(-1.1)
A 		1.1
(-2.3)
A 		4.9
(1.2)
A 		5.7
(2)
A 		6.8
(3)
A 		0.3
(-3)
A 		7
B 7.7
(3)
A 		4.4
(0.3)
A 		0.4
(-3)
A 		1.6
(-2)
A 		0.6
(-2.8)
A 		4.6
(0.5)
A 		7
C 0.7
(-3)
A 		6
(1.5)
A 		2.7
(-1.3)
A 		7.8
(3)
A 		0.7
(-3)
A 		0.7
(-3)
A 		7
avr 3.6
(0.3) 		3.8
(0.7) 		2.7
(-1.5) 		5
(3) 		2.7
(-1.5) 		1.9
(-3) 		3
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 190618_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14902
Sequence Type Exemplar sequence
Representative Public ID C02E7.14 NCBI
Target Description C02E7.14 /REP_DB=WormBase Gene ID /WP=CE07851 /TR=O16440 /GB=AAC24171.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=reverse transcriptase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description Only library file information is available for this probe set. See probe design information above.
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
SNAP00000021531 ENSEMBL cdna:SNAP chromosome:CEL140:V:4945870:4947315:1 11/11 None
GENEFINDER00000021551 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:4945920:4946564:1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000019371 4/11 Cross Hyb Matching Probes None
GENEFINDER00000019381 4/11 Cross Hyb Matching Probes None
SNAP00000032766 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:7361821-7362175(-) 18.76 51.47
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast T31857 hypothetical protein C02E7.14 - Caenorhabditis elegans 1.0E-120
blast T31857 hypothetical protein C02E7.14 - Caenorhabditis elegans 1.0E-104
blast NP_510671 F38E9.3 [Caenorhabditis elegans] 3.0E-79
blast AAP13750 Hypothetical protein Y52E8A.6 [Caenorhabditis elegans] ref|NP_001022461.1| Y52E8A.6 [Caenorhabditis elegans] 5.0E-79
blast NP_510671 F38E9.3 [Caenorhabditis elegans] 1.0E-77
blast T24544 hypothetical protein T05F1.12 - Caenorhabditis elegans 1.0E-76
Protein Domains
Database ID Description E-Value
Pfam IPR000477 EMBL-EBI RNA-directed DNA polymerase (Reverse transcriptase) 2.5E-4
Sequence
Target Sequence 
>C. ELEGANS:190618_S_AT
gatttgggagtttttgtcgacaacaagctaaacttcaaagctcacatcaattttgtctct
aatgctgcactgctgaaatgcagacaactacttagaacattccgctccacaaatgcaaac
ctctatttcaaactctacagcatctacgttcagccgatcttggattatggaagcgaggtc
tacagtccgagttcaatcgcctcgacgaaaaaacttgaaaaaccactgaaattcttctcc
cgacggatcttccaaagatgcaacatgtcatactcctcctacgatgatcgtctcaaccaa
tgcaatctcaagtcagttcaacacagacgaatcctacaaatcctcaggacgtaccataat
attatttgcggtgattttcatttccctgatgtctcatctcttgtcagaaaagcccgatct
cc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATTTGGGAGTTTTTGTCGACAACA 71 425 64 Antisense
AAGCTCACATCAATTTTGTCTCTAA 21 151 101 Antisense
TTGTCTCTAATGCTGCACTGCTGAA 692 703 116 Antisense
GACAACTACTTAGAACATTCCGCTC 176 365 146 Antisense
CATTCCGCTCCACAAATGCAAACCT 36 217 161 Antisense
GCAAACCTCTATTTCAAACTCTACA 108 319 178 Antisense
AAACTCTACAGCATCTACGTTCAGC 81 129 193 Antisense
ATCTACGTTCAGCCGATCTTGGATT 63 31 205 Antisense
ACAGACGAATCCTACAAATCCTCAG 350 107 386 Antisense
TCCTACAAATCCTCAGGACGTACCA 660 583 395 Antisense
CTCTTGTCAGAAAAGCCCGATCTCC 539 227 461 Antisense
Sequence Source Affymetrix Proprietary Database