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[190617_at]

Description C02E7.14 /REP_DB=WormBase Gene ID /WP=CE07851 /TR=O16440 /GB=AAC24171.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=reverse transcriptase
Cluster 6grp_total > 52      4grp_total > 19      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 131
1 2 3 4 range
A 95.4
(3)
A 		78.9
(-3)
A 		85.8
(-0.5)
A 		91.5
(1.6)
A 		17
B 62.5
(0.3)
A 		65.8
(0.7)
A 		30.9
(-3)
A 		87.5
(3)
A 		57
C 56.5
(-2.2)
A 		84.7
(-0.8)
A 		39.5
(-3)
A 		162
(3)
A 		123
avr 71.5
(-1.1) 		76.5
(-0.6) 		52.1
(-3) 		113.7
(3) 		62

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 117
1 2 3 4 5 6 range
A 81.5
(1.8)
A 		53.1
(-2.4)
A 		67.7
(-0.3)
A 		89.9
(3)
A 		59.2
(-1.5)
A 		49
(-3)
A 		41
B 29.3
(-3)
A 		50.1
(-1.8)
A 		134.6
(3)
A 		60.9
(-1.2)
A 		63.6
(-1)
A 		51.5
(-1.7)
A 		105
C 43.5
(-1.4)
A 		115.5
(3)
P 		101.7
(2.2)
M 		17.7
(-3)
A 		38.1
(-1.7)
A 		51.3
(-0.9)
P 		98
avr 51.4
(-2.9) 		72.9
(-0.4) 		101.3
(3) 		56.2
(-2.3) 		53.6
(-2.6) 		50.6
(-3) 		51
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 28
1 2 3 4 range
A 34.7
(3)
A 		17.1
(-2)
A 		22.4
(-0.5)
A 		13.4
(-3)
A 		21
B 19.9
(3)
A 		16.2
(1.3)
A 		7.2
(-3)
A 		18.7
(2.4)
A 		13
C 18.7
(-0.8)
A 		24.3
(1.7)
A 		13.8
(-3)
A 		27.3
(3)
A 		14
avr 24.4
(3) 		19.2
(-0.2) 		14.5
(-3) 		19.8
(0.2) 		10

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 32
1 2 3 4 5 6 range
A 15
(-1.3)
A 		18.9
(0.9)
A 		14.8
(-1.4)
A 		22.8
(3)
A 		17.9
(0.3)
A 		11.9
(-3)
A 		11
B 10.2
(-3)
A 		16.7
(-1.3)
A 		32.7
(3)
A 		16.1
(-1.4)
A 		25.8
(1.2)
A 		19.2
(-0.6)
A 		23
C 16.1
(-0.6)
A 		35.3
(3)
P 		25.9
(1.2)
M 		3.6
(-3)
A 		12.3
(-1.4)
A 		17.2
(-0.4)
P 		32
avr 13.8
(-3) 		23.6
(2.5) 		24.5
(3) 		14.2
(-2.8) 		18.7
(-0.3) 		16.1
(-1.7) 		11
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 190617_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14902
Sequence Type Exemplar sequence
Representative Public ID C02E7.14 NCBI
Target Description C02E7.14 /REP_DB=WormBase Gene ID /WP=CE07851 /TR=O16440 /GB=AAC24171.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=reverse transcriptase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description Only library file information is available for this probe set. See probe design information above.
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
SNAP00000021531 ENSEMBL cdna:SNAP chromosome:CEL140:V:4945870:4947315:1 11/11 None
GENEFINDER00000021551 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:4945920:4946564:1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000019371 4/11 Cross Hyb Matching Probes None
GENEFINDER00000019381 4/11 Cross Hyb Matching Probes None
SNAP00000032766 3/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:7361821-7362175(-) 18.76 51.47
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast T31857 hypothetical protein C02E7.14 - Caenorhabditis elegans 1.0E-120
blast T31857 hypothetical protein C02E7.14 - Caenorhabditis elegans 1.0E-104
blast NP_510671 F38E9.3 [Caenorhabditis elegans] 3.0E-79
blast AAP13750 Hypothetical protein Y52E8A.6 [Caenorhabditis elegans] ref|NP_001022461.1| Y52E8A.6 [Caenorhabditis elegans] 5.0E-79
blast NP_510671 F38E9.3 [Caenorhabditis elegans] 1.0E-77
blast T24544 hypothetical protein T05F1.12 - Caenorhabditis elegans 1.0E-76
Protein Domains
Database ID Description E-Value
Pfam IPR000477 EMBL-EBI RNA-directed DNA polymerase (Reverse transcriptase) 2.5E-4
Sequence
Target Sequence 
>C. ELEGANS:190617_AT
cgaggtctacagtccgagttcaatcgcctcgacgaaaaaacttgaaaaaccactgaaatt
cttctcccgacggatcttccaaagatgcaacatgtcatactcctcctacgatgatcgtct
caaccaatgcaatctcaagtcagttcaacacagacgaatcctacaaatcctcaggacgta
ccataatattatttgcggtgattttcatttccctgatgtctcatctcttgtcagaaaagc
ccgatctcccagatttccttacttactttgtgtctgtggcacatcca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CGAGGTCTACAGTCCGAGTTCAATC 690 249 237 Antisense
TACAGTCCGAGTTCAATCGCCTCGA 490 643 244 Antisense
GTTCAATCGCCTCGACGAAAAAACT 64 445 254 Antisense
TGAAAAACCACTGAAATTCTTCTCC 114 571 279 Antisense
GAAATTCTTCTCCCGACGGATCTTC 121 363 291 Antisense
CTCCCGACGGATCTTCCAAAGATGC 18 233 300 Antisense
AGATGCAACATGTCATACTCCTCCT 540 67 319 Antisense
TACTCCTCCTACGATGATCGTCTCA 105 647 334 Antisense
GATCGTCTCAACCAATGCAATCTCA 127 419 349 Antisense
TGCAATCTCAAGTCAGTTCAACACA 651 575 364 Antisense
TTACTTTGTGTCTGTGGCACATCCA 660 683 499 Antisense
Sequence Source Affymetrix Proprietary Database