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[190615_s_at] cysteine synthase like

Description F13B12.4 /REP_DB=WormBase Gene ID /WP=CE05602 /TR=Q19374 /GB=CAA94589.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=cysteine synthase like
Cluster 6grp_highest_10_10 > 18      6grp_high1_10_10 > 71      6grp_highest_nonorm > 72      6grp_total > 72      4grp_total > 56      6grp_highest_sub > 04_05      6grp_high1_sub > 04      6grp_total_sub > Hat      6grp_rule_based > S4      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 437
1 2 3 4 range
A 57.4
(-2.8)
A 		432.7
(2.3)
P 		480.5
(3)
P 		43.3
(-3)
A 		437
B 64.3
(-2.8)
P 		322.4
(1)
P 		463.4
(3)
P 		49.8
(-3)
A 		414
C 68
(-2.8)
P 		347.4
(1.3)
P 		468.7
(3)
P 		51.4
(-3)
A 		417
avr 63.2
(-2.8) 		367.5
(1.5) 		470.9
(3) 		48.2
(-3) 		423

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 444
1 2 3 4 5 6 range
A 163.9
(-3)
P 		345.7
(-0.3)
P 		338.3
(-0.4)
P 		565.5
(3)
P 		414.4
(0.7)
P 		192
(-2.6)
P 		402
B 121.3
(-3)
P 		365.6
(0.6)
P 		366.4
(0.7)
P 		490
(2.5)
P 		523.3
(3)
P 		246.3
(-1.1)
P 		402
C 146.5
(-3)
P 		368.8
(0.7)
P 		481.3
(2.6)
P 		503
(3)
P 		372.8
(0.8)
P 		226.8
(-1.6)
P 		357
avr 143.9
(-3) 		360
(0.5) 		395.3
(1) 		519.5
(3) 		436.8
(1.7) 		221.7
(-1.8) 		376
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 157
1 2 3 4 range
A 20.9
(-2.3)
A 		93.9
(1.4)
P 		125.6
(3)
P 		6.3
(-3)
A 		119
B 20.5
(-2.4)
P 		79.6
(1.3)
P 		107.4
(3)
P 		10.6
(-3)
A 		97
C 22.5
(-2.5)
P 		99.9
(0.5)
P 		163.4
(3)
P 		8.7
(-3)
A 		155
avr 21.3
(-2.4) 		91.1
(1) 		132.1
(3) 		8.5
(-3) 		124

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 182
1 2 3 4 5 6 range
A 30.2
(-3)
P 		123
(1.9)
P 		73.7
(-0.7)
P 		143.4
(3)
P 		125
(2)
P 		46.8
(-2.1)
P 		113
B 42.2
(-3)
P 		121.7
(-0.2)
P 		89
(-1.4)
P 		129.8
(0.1)
P 		212.6
(3)
P 		91.9
(-1.3)
P 		170
C 54.3
(-3)
P 		112.5
(2.1)
P 		122.5
(3)
P 		101.2
(1.1)
P 		120.6
(2.8)
P 		75.9
(-1.1)
P 		68
avr 42.2
(-3) 		119.1
(1.2) 		95.1
(-0.1) 		124.8
(1.5) 		152.7
(3) 		71.5
(-1.4) 		111
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 190615_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9318
Sequence Type Exemplar sequence
Representative Public ID F13B12.4 NCBI
Target Description F13B12.4 /REP_DB=WormBase Gene ID /WP=CE05602 /TR=Q19374 /GB=CAA94589.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=cysteine synthase like
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069527(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069527 NCBI Caenorhabditis elegans F13B12.4 (F13B12.4) mRNA, complete cds. 11/11 None
SNAP00000009880 ENSEMBL cdna:SNAP chromosome:CEL140:IV:10444743:10446774:-1 11/11 None
GENEFINDER00000009883 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:10444743:10446774:-1 11/11 None
F13B12.4 ENSEMBL cdna:known chromosome:CEL140:IV:10444618:10446778:-1 gene:F13B12.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:10444748-10446780(-) 100.0 100.0
Public Domain and Genome References
Gene Title cysteine synthase like
Ensembl F13B12.4
Entrez Gene 177937 Entrez gene
SwissProt Q19374 EMBL-EBI
WormBase CE05602 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6520 amino acid metabolism inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
16829 lyase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA94589 Hypothetical protein F13B12.4 [Caenorhabditis elegans] ref|NP_501928.1| F13B12.4 [Caenorhabditis elegans] 0.0
blast CAE63818 Hypothetical protein CBG08368 [Caenorhabditis briggsae] 1.0E-179
blast CAB02888 Hypothetical protein F01D4.8 [Caenorhabditis elegans] emb|CAA94593.1| Hypothetical protein F01D4.8 [Caenorhabditis elegans] ref|NP_501929.1| F01D4.8 [Caenorhabditis elegans] 1.0E-175
Protein Domains
Database ID Description E-Value
Pfam IPR001926 EMBL-EBI Pyridoxal-5-phosphate-dependent enzyme, beta subunit 1.3E-54
Sequence
Target Sequence 
>C. ELEGANS:190615_S_AT
tgactactttgttcattcagcaggaaccggtggaactatttcgtcagttggcagatatgt
cgctagatatggagcacctacaaaagtcgtactctccgattctcaatactctttattcta
cgattatgtaattggacataaattcacaaatcaatctggtgcaggtatttggacacctcc
agggattgctggaattggttacggatatgatattgaaccagtgtggtacggagaaacaac
aagtttaacaagaaatgtaatccatgaagccatgaaaatgcctgatattgcatcagtagc
tacaatgagaattctcgatgaaaaaggttataatgtgggaccgtcaacatcactcaactt
ccttgtttctctttacaaagcctatcagaacaaagccagaaaatctgctatcaagcatcg
tcttacgattgttacactggcttgtgacccaggagatttctaccgtagtacgtaccttaa
caacgaatgggtcgagaaaagtttcaagaagtttggaggtgttatgggaatggaatgttg
gaaaaagctgattcaagaatcaattgatacgggttctgatttctattcga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGACTACTTTGTTCATTCAGCAGGA 506 571 693 Antisense
GAACCGGTGGAACTATTTCGTCAGT 539 345 716 Antisense
CAAAAGTCGTACTCTCCGATTCTCA 104 189 773 Antisense
TCTCCGATTCTCAATACTCTTTATT 187 611 785 Antisense
GGTGCAGGTATTTGGACACCTCCAG 50 501 850 Antisense
AATGTGGGACCGTCAACATCACTCA 493 163 1024 Antisense
AACATCACTCAACTTCCTTGTTTCT 115 139 1038 Antisense
CTGCTATCAAGCATCGTCTTACGAT 1 239 1097 Antisense
GATTGTTACACTGGCTTGTGACCCA 582 425 1119 Antisense
GTGACCCAGGAGATTTCTACCGTAG 17 477 1136 Antisense
GATACGGGTTCTGATTTCTATTCGA 215 425 1258 Antisense
Sequence Source Affymetrix Proprietary Database