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[190609_at] Coiled coil protein

Description ZK1098.6 /REP_DB=WormBase Gene ID /WP=CE00369 /TR=SW:P34606 /GB=CAA80134.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation /DEF=Coiled coil protein
Cluster 6grp_high1_10_10 > 77      4grp_high_8_8 > 28      6grp_total > 77      4grp_total > 35      6grp_high1_sub > Da      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 66
1 2 3 4 range
A 52.8
(-3)
P 		118.8
(3)
P 		68.9
(-1.5)
P 		88.5
(0.2)
P 		66
B 80.3
(0.8)
P 		91.6
(3)
P 		60.9
(-3)
P 		61.1
(-3)
P 		31
C 84.4
(0.6)
P 		78.6
(-0)
P 		52.5
(-3)
A 		105.1
(3)
P 		53
avr 72.5
(-1) 		96.3
(3) 		60.8
(-3) 		84.9
(1.1) 		36

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 76
1 2 3 4 5 6 range
A 95.5
(1.1)
P 		83.2
(-0.2)
P 		57.4
(-3)
P 		73
(-1.3)
P 		83.1
(-0.3)
P 		113.6
(3)
P 		56
B 70.1
(-1)
P 		45.2
(-3)
M 		89.9
(0.5)
P 		77.7
(-0.4)
P 		71.4
(-0.9)
P 		121.3
(3)
P 		76
C 50
(-2.7)
P 		46.9
(-3)
P 		51.9
(-2.5)
A 		68.4
(-0.8)
P 		72.7
(-0.3)
P 		104.7
(3)
P 		58
avr 71.9
(-1.5) 		58.4
(-3) 		66.4
(-2.1) 		73
(-1.4) 		75.7
(-1.1) 		113.2
(3) 		55
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 15
1 2 3 4 range
A 19.2
(-0.1)
P 		25.8
(3)
P 		18
(-0.7)
P 		13
(-3)
P 		13
B 25.6
(3)
P 		22.6
(1.6)
P 		14.1
(-2.5)
P 		13
(-3)
P 		13
C 27.9
(3)
P 		22.6
(-0.1)
P 		18.3
(-2.6)
A 		17.7
(-3)
P 		10
avr 24.2
(3) 		23.7
(2.7) 		16.8
(-1.6) 		14.6
(-3) 		10

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 33
1 2 3 4 5 6 range
A 17.6
(-1.2)
P 		29.6
(3)
P 		12.5
(-3)
P 		18.5
(-0.9)
P 		25.1
(1.4)
P 		27.7
(2.3)
P 		17
B 24.4
(-1.1)
P 		15
(-3)
M 		21.8
(-1.6)
P 		20.6
(-1.9)
P 		29
(-0.2)
P 		45.2
(3)
P 		30
C 18.5
(-1.5)
P 		14.3
(-2.7)
P 		13.2
(-3)
A 		13.8
(-2.8)
P 		23.5
(-0.2)
P 		35.1
(3)
P 		22
avr 20.2
(-1.7) 		19.6
(-1.9) 		15.8
(-3) 		17.6
(-2.5) 		25.9
(-0) 		36
(3) 		20
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 190609_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6390
Sequence Type Exemplar sequence
Representative Public ID ZK1098.6 NCBI
Target Description ZK1098.6 /REP_DB=WormBase Gene ID /WP=CE00369 /TR=SW:P34606 /GB=CAA80134.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation /DEF=Coiled coil protein
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_066700(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_066700 NCBI Caenorhabditis elegans ZK1098.6 (ZK1098.6) mRNA, complete cds. 11/11 None
SNAP00000005012 ENSEMBL cdna:SNAP chromosome:CEL140:III:9527071:9528585:1 10/11 None
GENEFINDER00000005027 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:9527071:9528585:1 10/11 None
ZK1098.6 ENSEMBL cdna:known chromosome:CEL140:III:9527071:9528560:1 gene:ZK1098.6 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:9527066-9528556(+) 100.0 100.0
Public Domain and Genome References
Gene Title Coiled coil protein
Ensembl ZK1098.6
Entrez Gene 191522 Entrez gene
SwissProt P34606 EMBL-EBI
WormBase CE00369 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA80134 Hypothetical protein ZK1098.6 [Caenorhabditis elegans] ref|NP_499101.1| ZK1098.6 [Caenorhabditis elegans] sp|P34606|YO66_CAEEL Hypothetical protein ZK1098.6 in chromosome III 1.0E-147
blast CAA80134 Hypothetical protein ZK1098.6 [Caenorhabditis elegans] ref|NP_499101.1| ZK1098.6 [Caenorhabditis elegans] sp|P34606|YO66_CAEEL Hypothetical protein ZK1098.6 in chromosome III 1.0E-142
blast CAE67806 Hypothetical protein CBG13384 [Caenorhabditis briggsae] 4.0E-35
blast CAE67806 Hypothetical protein CBG13384 [Caenorhabditis briggsae] 4.0E-34
blast XP_654864 hypothetical protein 42.t00003 [Entamoeba histolytica HM-1:IMSS] gb|EAL49477.1| hypothetical protein 42.t00003 [Entamoeba histolytica HM-1:IMSS] 8.0E-10
Sequence
Target Sequence 
>C. ELEGANS:190609_AT
gagcaaagagactgtgcattggaccaaaaaatactataaattgaaagcttatggacaaga
aatattgaaaaagcgagaaaatgaaattaaactgctgaaatcggaggtcgttgatggaaa
aaagaagctcaatgagatagttgaaacgatcaaccatttggaggatgcagcaaataaaga
aaagatcaaacggaagaatgtggaaagtgagatgcgaaaagctgacaagatcatcaagga
tgctttgagggaagagatggaagcaaggaaacagtcacagaaagaatatcttcttgagaa
aactgaacgaatggctctggaagagaaaattagtgaaaatgccgctagtgctcgcggagt
catcgtccgaagtacttgtcctgttgccgatcatcacatcctgaaccagcgaatcgatgt
tcttcaacgacagcgaaaaattctagtggaaagtgtaagccaacattttcccatgttcct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAGCAAAGAGACTGTGCATTGGACC 186 391 336 Antisense
AAACTGCTGAAATCGGAGGTCGTTG 613 121 424 Antisense
AGCTGACAAGATCATCAAGGATGCT 476 81 555 Antisense
AAACTGAACGAATGGCTCTGGAAGA 214 127 635 Antisense
TAGTGAAAATGCCGCTAGTGCTCGC 640 653 666 Antisense
ATGCCGCTAGTGCTCGCGGAGTCAT 356 39 674 Antisense
CTCGCGGAGTCATCGTCCGAAGTAC 648 231 686 Antisense
TCATCGTCCGAAGTACTTGTCCTGT 475 621 695 Antisense
GATCATCACATCCTGAACCAGCGAA 191 421 724 Antisense
AATCGATGTTCTTCAACGACAGCGA 555 167 747 Antisense
TAAGCCAACATTTTCCCATGTTCCT 250 637 791 Antisense
Sequence Source Affymetrix Proprietary Database