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[190608_s_at] SER/THR protein kinase

Description C09D4.3 /REP_DB=WormBase Gene ID /WP=CE27672 /TR=O01733 /GB=AAB53978.2 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation /DEF=SER-THR protein kinase
Cluster 6grp_high1_10_10 > 88      6grp_total > 88      4grp_total > 12      6grp_high1_sub > Da      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 116
1 2 3 4 range
A 85.9
(-0.9)
P 		59.1
(-3)
M 		80.4
(-1.3)
A 		135.9
(3)
P 		77
B 72.8
(0.5)
P 		72.9
(0.6)
A 		28.2
(-3)
A 		103.6
(3)
P 		75
C 86.9
(-0.8)
P 		75.5
(-1.6)
A 		54
(-3)
A 		144.5
(3)
P 		91
avr 81.9
(-0.7) 		69.2
(-1.8) 		54.2
(-3) 		128
(3) 		74

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 526
1 2 3 4 5 6 range
A 91.1
(-2.9)
P 		85.5
(-3)
P 		104.7
(-2.8)
P 		143.9
(-2.3)
P 		305.7
(-0.3)
P 		573
(3)
P 		488
B 91.9
(-2.3)
P 		46.9
(-3)
A 		62.2
(-2.8)
M 		80.3
(-2.5)
P 		240
(0)
P 		431.4
(3)
P 		385
C 99
(-2.4)
P 		98.3
(-2.5)
P 		63.6
(-3)
P 		129.5
(-2)
P 		274.7
(0.3)
P 		444.6
(3)
P 		381
avr 94
(-2.7) 		76.9
(-3) 		76.8
(-3) 		117.9
(-2.4) 		273.5
(-0.1) 		483
(3) 		406
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 25
1 2 3 4 range
A 31.3
(3)
P 		12.8
(-3)
M 		21
(-0.3)
A 		19.9
(-0.7)
P 		19
B 23.2
(3)
P 		18
(1.1)
A 		6.5
(-3)
A 		22.1
(2.6)
P 		17
C 28.8
(3)
P 		21.7
(-1.3)
A 		18.8
(-3)
A 		24.4
(0.4)
P 		10
avr 27.8
(3) 		17.5
(-2) 		15.4
(-3) 		22.1
(0.2) 		12

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 146
1 2 3 4 5 6 range
A 16.8
(-3)
P 		30.4
(-2.3)
P 		22.8
(-2.7)
P 		36.5
(-2)
P 		92.2
(0.7)
P 		139.5
(3)
P 		123
B 32
(-2.3)
P 		15.6
(-3)
A 		15.1
(-3)
M 		21.3
(-2.7)
P 		97.5
(0.4)
P 		160.8
(3)
P 		146
C 36.7
(-2.1)
P 		30
(-2.4)
P 		16.2
(-3)
P 		26.1
(-2.6)
P 		88.9
(0.3)
P 		148.8
(3)
P 		133
avr 28.5
(-2.5) 		25.3
(-2.7) 		18
(-3) 		28
(-2.5) 		92.9
(0.4) 		149.7
(3) 		132
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 190608_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1245
Sequence Type Exemplar sequence
Representative Public ID C09D4.3 NCBI
Target Description C09D4.3 /REP_DB=WormBase Gene ID /WP=CE27672 /TR=O01733 /GB=AAB53978.2 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation /DEF=SER-THR protein kinase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059209(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059209 NCBI Caenorhabditis elegans C09D4.3 (C09D4.3) mRNA, complete cds. 11/11 A 
GENEFINDER00000041673 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:5488399:5490615:1 11/11 None
C09D4.3 ENSEMBL cdna:known chromosome:CEL140:I:5488358:5490566:1 gene:C09D4.3 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000041667 5/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:5487988-5490615(+) 100.0 100.0
Public Domain and Genome References
Gene Title SER/THR protein kinase
Ensembl C09D4.3
Entrez Gene 172202 Entrez gene
SwissProt O01733 EMBL-EBI
WormBase CE27672 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6468 protein amino acid phosphorylation inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4672 protein kinase activity inferred from electronic annotation QuickGO AmiGO
4674 protein serine/threonine kinase activity inferred from electronic annotation QuickGO AmiGO
5524 ATP binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAB53978 Hypothetical protein C09D4.3 [Caenorhabditis elegans] ref|NP_491610.1| C09D4.3 [Caenorhabditis elegans] 0.0
blast CAE67069 Hypothetical protein CBG12477 [Caenorhabditis briggsae] 0.0
blast CAE67403 Hypothetical protein CBG12889 [Caenorhabditis briggsae] 4.0E-68
blast CAE67403 Hypothetical protein CBG12889 [Caenorhabditis briggsae] 6.0E-68
Protein Domains
Database ID Description E-Value
Pfam IPR000719 EMBL-EBI Protein kinase 3.5E-10
Pfam IPR000719 EMBL-EBI Protein kinase 3.5E-10
Sequence
Target Sequence 
>C. ELEGANS:190608_S_AT
ggactggcaagtggaagaatctcaacattcggagctcaccgaaacagcttctgtcatgtc
tgatatggcaattatggctgaacaaggagctactaactacactgatcgtgcctgtgagag
tataccaataggcatatactcgtctcacaactgttcttcatcactactcttctcatcaaa
tctcgaatcgaatcgagcactttccagttcaatttcctctttctctcactcttttccaat
ccaaagtaaagaaccgattgcctctttttgtattc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGACTGGCAAGTGGAAGAATCTCAA 705 523 1404 Antisense
AGCTCACCGAAACAGCTTCTGTCAT 694 79 1436 Antisense
AAACAGCTTCTGTCATGTCTGATAT 625 125 1445 Antisense
GAACAAGGAGCTACTAACTACACTG 130 353 1483 Antisense
AACTACACTGATCGTGCCTGTGAGA 407 139 1498 Antisense
ATAGGCATATACTCGTCTCACAACT 508 21 1531 Antisense
TCTCACAACTGTTCTTCATCACTAC 540 613 1546 Antisense
CACTACTCTTCTCATCAAATCTCGA 664 197 1565 Antisense
GAGCACTTTCCAGTTCAATTTCCTC 512 389 1598 Antisense
CTCTCACTCTTTTCCAATCCAAAGT 312 231 1626 Antisense
GAACCGATTGCCTCTTTTTGTATTC 538 345 1654 Antisense
Sequence Source Affymetrix Proprietary Database