[Home] | [Total List]

[190607_at] SER/THR protein kinase

Description C09D4.3 /REP_DB=WormBase Gene ID /WP=CE27672 /TR=O01733 /GB=AAB53978.2 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation /DEF=SER-THR protein kinase
Cluster 6grp_total > 97      4grp_total > 25      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 48
1 2 3 4 range
A 8.8
(-2.4)
A 		4.7
(-3)
A 		17
(-1.1)
A 		43.4
(3)
A 		39
B 9.9
(-3)
A 		23.7
(-0.2)
A 		39.4
(3)
A 		23.1
(-0.3)
A 		30
C 4.4
(-2.7)
A 		50
(3)
A 		1.6
(-3)
A 		45.6
(2.5)
A 		48
avr 7.7
(-3) 		26.1
(0.7) 		19.3
(-0.7) 		37.4
(3) 		30

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 157
1 2 3 4 5 6 range
A 1.4
(-3)
A 		0.9
(-3)
A 		17.3
(-2.2)
A 		42.3
(-1)
A 		105.6
(2)
P 		125.3
(3)
P 		124
B 10.1
(-2.8)
A 		17.6
(-2.5)
A 		6.2
(-3)
A 		36.8
(-1.7)
A 		94.2
(0.7)
P 		149.1
(3)
P 		143
C 3.2
(-3)
A 		17.6
(-2.4)
A 		4.5
(-2.9)
A 		33.3
(-1.8)
A 		88.9
(0.3)
P 		158
(3)
P 		155
avr 4.9
(-3) 		12
(-2.7) 		9.3
(-2.8) 		37.5
(-1.6) 		96.2
(0.9) 		144.1
(3) 		139
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 14
1 2 3 4 range
A 3.2
(-0.6)
A 		1
(-3)
A 		4.5
(0.9)
A 		6.4
(3)
A 		5
B 3.2
(-3)
A 		5.8
(-0.4)
A 		9.1
(3)
A 		4.9
(-1.3)
A 		6
C 1.5
(-2.6)
A 		14.4
(3)
A 		0.5
(-3)
A 		7.7
(0.1)
A 		14
avr 2.6
(-3) 		7.1
(3) 		4.7
(-0.2) 		6.3
(1.9) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 55
1 2 3 4 5 6 range
A 0.3
(-3)
A 		0.3
(-3)
A 		3.8
(-2.3)
A 		10.7
(-1)
A 		31.9
(3)
P 		30.5
(2.7)
P 		32
B 3.5
(-2.8)
A 		5.9
(-2.5)
A 		1.5
(-3)
A 		9.8
(-2.1)
A 		38.3
(1.1)
P 		55.6
(3)
P 		54
C 1.2
(-3)
A 		5.4
(-2.5)
A 		1.1
(-3)
A 		6.7
(-2.4)
A 		28.8
(0.2)
P 		52.9
(3)
P 		52
avr 1.7
(-3) 		3.9
(-2.7) 		2.1
(-2.9) 		9.1
(-2) 		33
(1.2) 		46.3
(3) 		45
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 190607_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1245
Sequence Type Exemplar sequence
Representative Public ID C09D4.3 NCBI
Target Description C09D4.3 /REP_DB=WormBase Gene ID /WP=CE27672 /TR=O01733 /GB=AAB53978.2 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation /DEF=SER-THR protein kinase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059209(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059209 NCBI Caenorhabditis elegans C09D4.3 (C09D4.3) mRNA, complete cds. 10/11 None
SNAP00000041667 ENSEMBL cdna:SNAP chromosome:CEL140:I:5488399:5490412:1 10/11 None
GENEFINDER00000041673 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:5488399:5490615:1 11/11 None
C09D4.3 ENSEMBL cdna:known chromosome:CEL140:I:5488358:5490566:1 gene:C09D4.3 10/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:5487988-5490615(+) 100.0 100.0
Public Domain and Genome References
Gene Title SER/THR protein kinase
Ensembl C09D4.3
Entrez Gene 172202 Entrez gene
SwissProt O01733 EMBL-EBI
WormBase CE27672 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6468 protein amino acid phosphorylation inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4672 protein kinase activity inferred from electronic annotation QuickGO AmiGO
4674 protein serine/threonine kinase activity inferred from electronic annotation QuickGO AmiGO
5524 ATP binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAB53978 Hypothetical protein C09D4.3 [Caenorhabditis elegans] ref|NP_491610.1| C09D4.3 [Caenorhabditis elegans] 0.0
blast CAE67069 Hypothetical protein CBG12477 [Caenorhabditis briggsae] 0.0
blast CAE67403 Hypothetical protein CBG12889 [Caenorhabditis briggsae] 4.0E-68
Protein Domains
Database ID Description E-Value
Pfam IPR000719 EMBL-EBI Protein kinase 3.5E-10
Pfam IPR000719 EMBL-EBI Protein kinase 3.5E-10
Sequence
Target Sequence 
>C. ELEGANS:190607_AT
gaatgctggttctacatgctcattgagatgttggttggagagttgccatggcgtcatatg
tctgatcgtacacttgttggacaatcgaagctctcaattcgaaatgaatctcgtcgtttg
ttcttcaatcgaactccaagacagtttgagacgatcatggatatgatcgatggatactca
ttcgaaatcagaccagagtacagacatttgaaggcattgattaatgagattcgtatggaa
aatatgattcctgatcgttgcaagtgggactggcaagtggaagaatctcaacattcggag
ctcaccgaaacagcttctgtcatgtctgatatggcaattatggctgaacaaggagctact
aactacactgatcgtgcctgtgagagtataccaat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAATGCTGGTTCTACATGCTCATTG 241 331 1138 Antisense
TGGTTGGAGAGTTGCCATGGCGTCA 437 551 1169 Antisense
GCCATGGCGTCATATGTCTGATCGT 160 281 1182 Antisense
GTCTGATCGTACACTTGTTGGACAA 607 471 1197 Antisense
GTTGGACAATCGAAGCTCTCAATTC 198 437 1213 Antisense
AAATGAATCTCGTCGTTTGTTCTTC 39 121 1239 Antisense
TTTGTTCTTCAATCGAACTCCAAGA 170 667 1254 Antisense
GGATACTCATTCGAAATCAGACCAG 400 511 1309 Antisense
GACCAGAGTACAGACATTTGAAGGC 247 383 1328 Antisense
ATGATTCCTGATCGTTGCAAGTGGG 252 47 1381 Antisense
ATCGTGCCTGTGAGAGTATACCAAT 298 33 1508 Antisense
Sequence Source Affymetrix Proprietary Database