[Home] | [Total List]

[190606_at] ser/thr-protein kinase

Description C34G6.5 /REP_DB=WormBase Gene ID /WP=CE26909 /TR=O01493 /GB=AAB52478.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation /DEF=ser-thr-protein kinase
Cluster 6grp_highest_10_10 > 88      6grp_high1_10_10 > 97      4grp_highest_8_8 > 07      4grp_high_8_8 > 21      6grp_highest_nonorm > 92      6grp_total > 87      4grp_total > 18      6grp_highest_sub > Da      6grp_high1_sub > In      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 145
1 2 3 4 range
A 92.2
(-3)
P 		147.4
(-0.6)
P 		98
(-2.7)
P 		228
(3)
P 		136
B 155.9
(2.2)
P 		147.8
(0.2)
P 		134.8
(-3)
P 		159
(3)
P 		24
C 83.2
(-3)
P 		120.4
(-1.2)
P 		122.1
(-1.1)
P 		206.3
(3)
P 		123
avr 110.4
(-3) 		138.5
(-1.1) 		118.3
(-2.5) 		197.8
(3) 		87

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 499
1 2 3 4 5 6 range
A 139
(-2.9)
P 		133.2
(-3)
P 		157.1
(-2.7)
P 		251.1
(-1.4)
P 		405.2
(0.6)
P 		586.2
(3)
P 		453
B 128.4
(-2.9)
P 		123.3
(-3)
P 		139.6
(-2.8)
P 		238.1
(-1.6)
P 		310.1
(-0.7)
P 		618.1
(3)
P 		495
C 133.2
(-2.8)
P 		118.9
(-3)
P 		152.3
(-2.5)
P 		236.9
(-1.4)
P 		403.5
(0.9)
P 		560.1
(3)
P 		441
avr 133.5
(-2.9) 		125.1
(-3) 		149.7
(-2.7) 		242
(-1.5) 		372.9
(0.2) 		588.1
(3) 		463
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 24
1 2 3 4 range
A 33.6
(3)
P 		32
(1.8)
P 		25.6
(-3)
P 		33.4
(2.9)
P 		8
B 49.7
(3)
P 		36.5
(-1.3)
P 		31.2
(-3)
P 		33.9
(-2.1)
P 		19
C 27.5
(-3)
P 		34.6
(-0.2)
P 		42.5
(3)
P 		34.8
(-0.1)
P 		15
avr 36.9
(3) 		34.4
(-0.9) 		33.1
(-3) 		34
(-1.6) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 205
1 2 3 4 5 6 range
A 25.6
(-3)
P 		47.4
(-1.9)
P 		34.2
(-2.6)
P 		63.7
(-1)
P 		122.3
(2)
P 		142.7
(3)
P 		117
B 44.7
(-2.7)
P 		41
(-2.8)
P 		33.9
(-3)
P 		63.1
(-2.1)
P 		126
(-0.2)
P 		230.5
(3)
P 		197
C 49.4
(-2.5)
P 		36.3
(-3)
P 		38.8
(-2.9)
P 		47.6
(-2.6)
P 		130.6
(0.7)
P 		187.5
(3)
P 		151
avr 39.9
(-2.8) 		41.6
(-2.8) 		35.6
(-3) 		58.1
(-2.1) 		126.3
(0.6) 		186.9
(3) 		151
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 190606_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1792
Sequence Type Exemplar sequence
Representative Public ID C34G6.5 NCBI
Target Description C34G6.5 /REP_DB=WormBase Gene ID /WP=CE26909 /TR=O01493 /GB=AAB52478.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation /DEF=ser-thr-protein kinase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059304(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059304 NCBI Caenorhabditis elegans C34G6.5 (C34G6.5) mRNA, complete cds. 11/11 None
SNAP00000014373 ENSEMBL cdna:SNAP chromosome:CEL140:I:5880321:5882268:1 11/11 None
GENEFINDER00000014384 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:5880700:5882268:1 11/11 None
C34G6.5 ENSEMBL cdna:known chromosome:CEL140:I:5880310:5882418:1 gene:C34G6.5 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:5880699-5882268(+) 100.0 100.0
Public Domain and Genome References
Gene Title ser/thr-protein kinase
Ensembl C34G6.5
Entrez Gene 172260 Entrez gene
SwissProt O01493 EMBL-EBI
WormBase CE26909 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6468 protein amino acid phosphorylation inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4672 protein kinase activity inferred from electronic annotation QuickGO AmiGO
4674 protein serine/threonine kinase activity inferred from electronic annotation QuickGO AmiGO
4713 protein-tyrosine kinase activity inferred from electronic annotation QuickGO AmiGO
5524 ATP binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAB52478 Hypothetical protein C34G6.5 [Caenorhabditis elegans] ref|NP_491705.1| C34G6.5 [Caenorhabditis elegans] 0.0
blast CAE60410 Hypothetical protein CBG04016 [Caenorhabditis briggsae] 1.0E-167
blast CAE60410 Hypothetical protein CBG04016 [Caenorhabditis briggsae] 1.0E-141
blast CAD25731 CELL CYCLE PROTEIN KINASE OF THE CDC7 SUBFAMILY [Encephalitozoon cuniculi GB-M1] ref|NP_586127.1| CELL CYCLE PROTEIN KINASE OF THE CDC7 SUBFAMILY [Encephalitozoon cuniculi GB-M1] 3.0E-22
Protein Domains
Database ID Description E-Value
Pfam IPR000719 EMBL-EBI Protein kinase 8.8E-32
Pfam IPR000719 EMBL-EBI Protein kinase 0.093
Pfam IPR000719 EMBL-EBI Protein kinase 2.4E-22
Pfam IPR000719 EMBL-EBI Protein kinase 0.093
Sequence
Target Sequence 
>C. ELEGANS:190606_AT
aggtgttcgtgctccagaacttttgtttgggattggtttgtgtcatccatcaatagatat
attttcctgtggaattgttctcctttcacttgtttctgtaaaacatccattctttatgcc
aaaagatgaaactgaaaatattatgcatctcgctttcttactcggatctgaaactatcga
aaaaatggctcatagtgaaggactacgagtgacattatctgaaaaacttcctcccgcaga
ttactatcatctaatattatgccttcgatttggtttcgatcatgttcgacgacactgttc
ttcgtcaagacaaccatgtacaatatgccaaaaacgttcgttcaataattcgatgggagt
gtgcttttgccgaaaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGGTGTTCGTGCTCCAGAACTTTTG 553 57 483 Antisense
GGATTGGTTTGTGTCATCCATCAAT 17 509 512 Antisense
TCCTGTGGAATTGTTCTCCTTTCAC 665 593 547 Antisense
TTCTCCTTTCACTTGTTTCTGTAAA 263 693 560 Antisense
TATTATGCATCTCGCTTTCTTACTC 582 663 621 Antisense
TTATCTGAAAAACTTCCTCCCGCAG 127 681 697 Antisense
TCCTCCCGCAGATTACTATCATCTA 646 593 711 Antisense
AATATTATGCCTTCGATTTGGTTTC 361 173 735 Antisense
GATCATGTTCGACGACACTGTTCTT 194 421 760 Antisense
GACACTGTTCTTCGTCAAGACAACC 492 367 773 Antisense
GATGGGAGTGTGCTTTTGCCGAAAA 359 405 834 Antisense
Sequence Source Affymetrix Proprietary Database