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[190602_at] serine/threonine kinase

Description K04C1.5 /REP_DB=WormBase Gene ID /WP=CE06089 /TR=Q21204 /GB=CAA94212.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation /DEF=serine-threonine kinase
Cluster 6grp_total > 97      4grp_total > 07      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 53
1 2 3 4 range
A 25.7
(-3)
A 		57.8
(3)
P 		44.5
(0.5)
A 		32.4
(-1.7)
A 		32
B 40
(0.6)
A 		31.9
(-2.3)
A 		46.9
(3)
A 		29.9
(-3)
P 		17
C 44.3
(2.4)
P 		4.5
(-3)
A 		10
(-2.2)
A 		48.4
(3)
A 		44
avr 36.7
(2.8) 		31.4
(-3) 		33.8
(-0.4) 		36.9
(3) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 145
1 2 3 4 5 6 range
A 28.1
(-2)
A 		4.4
(-3)
A 		10.8
(-2.7)
A 		17.5
(-2.5)
A 		109
(1.3)
P 		149.1
(3)
P 		145
B 16.9
(-3)
A 		26.9
(-2.5)
A 		21.7
(-2.8)
A 		29.9
(-2.4)
A 		100.5
(0.9)
P 		144
(3)
P 		127
C 5.1
(-3)
A 		11.2
(-2.7)
A 		6.7
(-2.9)
A 		60.7
(-0.4)
P 		77.6
(0.4)
P 		133.9
(3)
P 		129
avr 16.7
(-2.8) 		14.2
(-2.9) 		13.1
(-3) 		36
(-1.9) 		95.7
(0.8) 		142.3
(3) 		129
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 13
1 2 3 4 range
A 9.4
(0.6)
A 		12.6
(3)
P 		11.6
(2.2)
A 		4.7
(-3)
A 		8
B 12.8
(3)
A 		7.9
(-1.6)
A 		10.9
(1.2)
A 		6.4
(-3)
P 		6
C 14.7
(3)
P 		1.3
(-3)
A 		3.5
(-2)
A 		8.2
(0.1)
A 		13
avr 12.3
(3) 		7.3
(-2.1) 		8.7
(-0.7) 		6.4
(-3) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 52
1 2 3 4 5 6 range
A 5.2
(-2.4)
A 		1.6
(-3)
A 		2.3
(-2.9)
A 		4.4
(-2.5)
A 		32.9
(2.4)
P 		36.3
(3)
P 		35
B 5.9
(-2.9)
A 		9
(-2.5)
A 		5.3
(-3)
A 		7.9
(-2.7)
A 		40.8
(1.4)
P 		53.7
(3)
P 		48
C 1.9
(-3)
A 		3.4
(-2.8)
A 		1.7
(-3)
A 		12.2
(-1.5)
P 		25.1
(0.3)
P 		44.8
(3)
P 		43
avr 4.3
(-2.8) 		4.7
(-2.8) 		3.1
(-3) 		8.2
(-2.3) 		32.9
(1.3) 		44.9
(3) 		42
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 190602_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17709
Sequence Type Exemplar sequence
Representative Public ID K04C1.5 NCBI
Target Description K04C1.5 /REP_DB=WormBase Gene ID /WP=CE06089 /TR=Q21204 /GB=CAA94212.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation /DEF=serine-threonine kinase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077975(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077975 NCBI Caenorhabditis elegans K04C1.5 (K04C1.5) mRNA, complete cds. 11/11 None
SNAP00000041362 ENSEMBL cdna:SNAP chromosome:CEL140:X:14248114:14249509:1 11/11 None
GENEFINDER00000041364 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:14248114:14249509:1 11/11 None
K04C1.5 ENSEMBL cdna:known chromosome:CEL140:X:14248114:14249509:1 gene:K04C1.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:14248113-14249509(+) 100.0 100.0
Public Domain and Genome References
Gene Title serine/threonine kinase
Ensembl K04C1.5
Entrez Gene 186980 Entrez gene
SwissProt Q21204 EMBL-EBI
WormBase CE06089 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6468 protein amino acid phosphorylation inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4672 protein kinase activity inferred from electronic annotation QuickGO AmiGO
4674 protein serine/threonine kinase activity inferred from electronic annotation QuickGO AmiGO
5524 ATP binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA94212 Hypothetical protein K04C1.5 [Caenorhabditis elegans] ref|NP_510376.1| K04C1.5 [Caenorhabditis elegans] 1.0E-145
blast CAA94215 Hypothetical protein E02H4.6 [Caenorhabditis elegans] emb|CAA91980.1| Hypothetical protein E02H4.6 [Caenorhabditis elegans] ref|NP_510377.1| E02H4.6 [Caenorhabditis elegans] 2.0E-53
blast AAB00613 Hypothetical protein F39F10.3 [Caenorhabditis elegans] ref|NP_510730.1| F39F10.3 [Caenorhabditis elegans] 1.0E-14
Protein Domains
Database ID Description E-Value
Pfam IPR000719 EMBL-EBI Protein kinase 2.1E-6
Sequence
Target Sequence 
>C. ELEGANS:190602_AT
agatgagaagctttccccgagagttgtcatcaaattggcttttcgccttgtcagtatcct
ggagcatattcatcgcaaaggggttgttcatcaagacattaaattggacaatgtggtgtt
tggtgcaaaggttgggaacaaacttgatatcgtcctgattgactacggaattgcggcatt
cactaaaccaaaacctccacgagatcttgtagacggagctttgcattgtactaccgattt
ttcaagtagtgtatacgcttcacctggacttgtacaaggtctaaaaggcgacccagttga
tgatcttcagatgttgtcatttatgcttctgtgggcttccaaatataatccatttggcga
ggactcacttgaatctttgagaaagaagaaggagtttattgccaaaccaagcatcttcac
tcaaggagattacaaattcttgcgaccagttatttcgaaaattatggaacagaagcgaag
caaacgacctgactacaaagctatctccaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGATGAGAAGCTTTCCCCGAGAGTT 205 67 195 Antisense
ATTGGCTTTTCGCCTTGTCAGTATC 404 3 228 Antisense
GTATCCTGGAGCATATTCATCGCAA 269 455 248 Antisense
GAACAAACTTGATATCGTCCTGATT 563 351 330 Antisense
GGCATTCACTAAACCAAAACCTCCA 38 535 369 Antisense
AACCTCCACGAGATCTTGTAGACGG 184 147 386 Antisense
TATACGCTTCACCTGGACTTGTACA 15 661 446 Antisense
TTGTCATTTATGCTTCTGTGGGCTT 695 705 508 Antisense
GGCGAGGACTCACTTGAATCTTTGA 706 539 550 Antisense
GAAGCGAAGCAAACGACCTGACTAC 107 345 666 Antisense
GACCTGACTACAAAGCTATCTCCAA 337 383 680 Antisense
Sequence Source Affymetrix Proprietary Database