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[190601_at] LBP / BPI / CETP family

Description C05C9.1 /REP_DB=WormBase Gene ID /WP=CE02961 /TR=Q17654 /GB=CAA91969.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation /DEF=LBP - BPI - CETP family
Cluster 6grp_highest_10_10 > 08      6grp_high1_10_10 > 80      6grp_highest_nonorm > 80      6grp_total > 82      4grp_total > 49      6grp_high1_sub > 02_03_04_05      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 376
1 2 3 4 range
A 50.9
(-3)
A 		361.8
(3)
P 		350.2
(2.8)
P 		58.9
(-2.8)
A 		311
B 48.6
(-2.9)
A 		359.1
(2.7)
P 		373.5
(3)
P 		44.6
(-3)
P 		329
C 21.9
(-3)
A 		398.2
(3)
P 		296.6
(1.4)
P 		115.3
(-1.5)
P 		376
avr 40.5
(-3) 		373
(3) 		340.1
(2.4) 		72.9
(-2.4) 		333

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 242
1 2 3 4 5 6 range
A 112.4
(-2.5)
P 		311.6
(3)
P 		225.2
(0.6)
P 		281.7
(2.2)
P 		239.2
(1)
P 		94.3
(-3)
P 		217
B 75.8
(-3)
P 		273.6
(3)
P 		195.5
(0.6)
P 		248.3
(2.2)
P 		178.3
(0.1)
P 		74.4
(-3)
P 		199
C 88
(-2.9)
P 		316.7
(3)
P 		209.3
(0.3)
P 		227.9
(0.7)
P 		258.9
(1.5)
P 		82.2
(-3)
P 		235
avr 92.1
(-2.8) 		300.6
(3) 		210
(0.5) 		252.6
(1.7) 		225.5
(0.9) 		83.6
(-3) 		217
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 107
1 2 3 4 range
A 18.5
(-2.3)
A 		78.5
(2.1)
P 		91.6
(3)
P 		8.6
(-3)
A 		83
B 15.5
(-2.5)
A 		88.7
(3)
P 		86.5
(2.8)
P 		9.5
(-3)
P 		79
C 7.3
(-3)
A 		114.5
(3)
P 		103.4
(2.4)
P 		19.4
(-2.3)
P 		107
avr 13.8
(-2.9) 		93.9
(3) 		93.8
(3) 		12.5
(-3) 		81

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 90
1 2 3 4 5 6 range
A 20.7
(-3)
P 		110.8
(3)
P 		49
(-1.1)
P 		71.5
(0.4)
P 		72.2
(0.4)
P 		23
(-2.8)
P 		90
B 26.4
(-3)
P 		91.1
(3)
P 		47.5
(-1)
P 		65.8
(0.7)
P 		72.4
(1.3)
P 		27.7
(-2.9)
P 		65
C 32.6
(-2.6)
P 		96.6
(3)
P 		53.3
(-0.8)
P 		45.8
(-1.4)
P 		83.8
(1.9)
P 		27.5
(-3)
P 		69
avr 26.6
(-3) 		99.5
(3) 		49.9
(-1.1) 		61
(-0.1) 		76.1
(1.1) 		26.1
(-3) 		73
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 190601_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17034
Sequence Type Exemplar sequence
Representative Public ID C05C9.1 NCBI
Target Description C05C9.1 /REP_DB=WormBase Gene ID /WP=CE02961 /TR=Q17654 /GB=CAA91969.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation /DEF=LBP - BPI - CETP family
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077462(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077462 NCBI Caenorhabditis elegans C05C9.1 (C05C9.1) mRNA, complete cds. 11/11 None
SNAP00000024339 ENSEMBL cdna:SNAP chromosome:CEL140:X:11160903:11163608:1 11/11 None
GENEFINDER00000024343 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:11160903:11163608:1 11/11 None
C05C9.1 ENSEMBL cdna:known chromosome:CEL140:X:11160903:11163608:1 gene:C05C9.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:11160902-11163608(+) 100.0 100.0
Public Domain and Genome References
Gene Title LBP / BPI / CETP family
Ensembl C05C9.1
Entrez Gene 259726 Entrez gene
SwissProt Q17654 EMBL-EBI
WormBase CE33968 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
8289 lipid binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA91969 Hypothetical protein C05C9.1 [Caenorhabditis elegans] ref|NP_509863.2| C05C9.1 [Caenorhabditis elegans] 0.0
blast CAE70692 Hypothetical protein CBG17409 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR001124 EMBL-EBI Lipid-binding serum glycoprotein 2.9E-97
Sequence
Target Sequence 
>C. ELEGANS:190601_AT
gatgagcacacggttcagagcattattgctgcagcccactttgctggacatttaaaaact
aaaattgaatcacctttcttgaaaactagctgcgatgttctctgtattggtacagttttg
ccagagcttgccgagcaagttccaaatagaacactgtcagtagaagctgcgacattatca
ccgccagtcattgatctacaacaaggtcgagcattagtgtatctcaacgcatctttaaat
gtatttgcagctccacctctcaaaactgttgagggtagcatgctgacaattaatgtggaa
acggaattcactcttacaatggaaatgagaaataaacgagtaaaaggatatattaacatg
atcaatgctcaagcaaatctagttgacagtaaaaccgttgatttccttgtcaatatgtca
accccgttcctggaagatgctgtggatgttctgatcggaagaggtctaattgtagccgat
ccctt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATGAGCACACGGTTCAGAGCATTA 122 411 886 Antisense
CAGAGCATTATTGCTGCAGCCCACT 557 203 901 Antisense
TGCAGCCCACTTTGCTGGACATTTA 329 573 915 Antisense
ACTAGCTGCGATGTTCTCTGTATTG 612 101 970 Antisense
AGAAGCTGCGACATTATCACCGCCA 71 75 1047 Antisense
TCACCGCCAGTCATTGATCTACAAC 51 627 1063 Antisense
ATTAGTGTATCTCAACGCATCTTTA 369 13 1098 Antisense
TAAATGTATTTGCAGCTCCACCTCT 327 641 1121 Antisense
TCCTTGTCAATATGTCAACCCCGTT 465 591 1289 Antisense
CAACCCCGTTCCTGGAAGATGCTGT 588 187 1304 Antisense
GAGGTCTAATTGTAGCCGATCCCTT 215 403 1346 Antisense
Sequence Source Affymetrix Proprietary Database