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[190599_at] amino acid transporter

Description W03G1.1 /REP_DB=WormBase Gene ID /WP=CE17279 /TR=Q9UAY8 /GB=AAD14749.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation /DEF=amino acid transporter
Cluster 6grp_total > 04      4grp_total > 21      6grp_cgc > 41      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 256
1 2 3 4 range
A 270.9
(-0.5)
P 		211.5
(-2)
A 		170.6
(-3)
A 		410
(3)
P 		239
B 255.4
(3)
P 		253.9
(2.9)
A 		184.1
(-3)
A 		185.7
(-2.9)
P 		71
C 237.9
(1.2)
M 		232.8
(1)
A 		154.5
(-3)
A 		272.7
(3)
P 		118
avr 254.7
(1.3) 		232.7
(0.2) 		169.7
(-3) 		289.5
(3) 		120

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 163
1 2 3 4 5 6 range
A 239.7
(3)
A 		172.7
(0.3)
M 		127.6
(-1.5)
A 		137.2
(-1.1)
A 		127
(-1.5)
A 		91
(-3)
A 		149
B 219.2
(3)
M 		145.1
(-0.4)
A 		143.3
(-0.5)
P 		159.4
(0.2)
A 		108.6
(-2.1)
A 		89.2
(-3)
A 		130
C 167
(3)
A 		157.9
(2.4)
A 		122.7
(0.1)
A 		158.6
(2.4)
A 		131.8
(0.7)
A 		76.8
(-3)
A 		90
avr 208.6
(3) 		158.6
(0.6) 		131.2
(-0.8) 		151.7
(0.2) 		122.5
(-1.2) 		85.7
(-3) 		123
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 59
1 2 3 4 range
A 98.6
(3)
P 		45.9
(-2.9)
A 		44.6
(-3)
A 		60
(-1.3)
P 		54
B 81.4
(3)
P 		62.7
(0.3)
A 		42.7
(-2.6)
A 		39.6
(-3)
P 		42
C 78.8
(3)
M 		66.9
(0.8)
A 		53.9
(-1.6)
A 		46
(-3)
P 		33
avr 86.3
(3) 		58.5
(-1.3) 		47.1
(-3) 		48.5
(-2.8) 		39

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 54
1 2 3 4 5 6 range
A 44.2
(0.4)
A 		61.4
(3)
M 		27.8
(-2.1)
A 		34.8
(-1.1)
A 		38.3
(-0.5)
A 		22.2
(-3)
A 		39
B 76.3
(3)
M 		48.3
(-0.9)
A 		34.8
(-2.8)
P 		42.2
(-1.8)
A 		44.1
(-1.5)
A 		33.3
(-3)
A 		43
C 61.9
(3)
A 		48.2
(0.7)
A 		31.2
(-2.1)
A 		31.9
(-2)
A 		42.6
(-0.2)
A 		25.7
(-3)
A 		36
avr 60.8
(3) 		52.6
(1.5) 		31.3
(-2.3) 		36.3
(-1.4) 		41.7
(-0.4) 		27.1
(-3) 		34
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 190599_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10648
Sequence Type Exemplar sequence
Representative Public ID W03G1.1 NCBI
Target Description W03G1.1 /REP_DB=WormBase Gene ID /WP=CE17279 /TR=Q9UAY8 /GB=AAD14749.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation /DEF=amino acid transporter
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_067543(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_067543 NCBI Caenorhabditis elegans GLutamate Transporter family member (glt-7) (glt-7) mRNA, complete cds. 11/11 None
W03G1.1 ENSEMBL cdna:known chromosome:CEL140:IV:532135:535688:1 gene:W03G1.1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000041686 7/11 Cross Hyb Matching Probes None
GENEFINDER00000041692 4/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:532134-535688(+) 100.0 100.0
Public Domain and Genome References
Gene Title amino acid transporter
Gene Symbol glt-7
Ensembl W03G1.1
Entrez Gene 176880 Entrez gene
SwissProt Q9UAY8 EMBL-EBI
WormBase CE34387 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6835 dicarboxylic acid transport inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
17153 sodium:dicarboxylate symporter activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAD14749 Glutamate transporter family protein 7 [Caenorhabditis elegans] ref|NP_499944.2| GLutamate Transporter family member (glt-7) [Caenorhabditis elegans] 0.0
blast CAE58467 Hypothetical protein CBG01607 [Caenorhabditis briggsae] 0.0
blast CAE61901 Hypothetical protein CBG05893 [Caenorhabditis briggsae] 1.0E-122
Protein Domains
Database ID Description E-Value
Pfam IPR001991 EMBL-EBI Sodium:dicarboxylate symporter 2.6E-64
Pfam IPR001991 EMBL-EBI Sodium:dicarboxylate symporter 4.6E-30
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_499944.2 8 11-33,48-70,83-105,184-206,227-249,264-286,349-371,376-398
W03G1.1 8 11-33,48-70,83-105,184-206,227-249,264-286,349-371,376-398
Sequence
Target Sequence 
>C. ELEGANS:190599_AT
ttacgaggcagtcgccgttatcttcgtagcacagcttaacaacgtcacattatcctttgc
agatgtgattacaatttgcgtcactgcaactttcgcctcgatcggtctaaatgcggtacc
ggccgggctagtttcgatgttcgtcatcctatcatcggtaaatcttccagtttcggatat
tgcacttttgtttactgttgattggttcatagatcgcgtccgcactgctctaaatgtcct
cggtgatgcatattgtgcttgcgtcgttcagcactttttgcaggatgatcttactcatga
acatcatcatattttggacgaattgaagttagaggaaggcgacttagccgagattgatcg
cccggatcagctccccgaaaaagtgaaaaaggtatcattcgtcgacttccatcacattcc
atcgccaagtgctccgccagttttcaattccacaaaaacctattctttaaaatctgcaat
aattggccccctgagagcccacgttgctcttcaaaccagactttc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTACGAGGCAGTCGCCGTTATCTTC 415 681 960 Antisense
GTAGCACAGCTTAACAACGTCACAT 116 457 985 Antisense
AATTTGCGTCACTGCAACTTTCGCC 274 175 1032 Antisense
ACTTTCGCCTCGATCGGTCTAAATG 319 103 1048 Antisense
TGTTCGTCATCCTATCATCGGTAAA 255 563 1097 Antisense
TGATTGGTTCATAGATCGCGTCCGC 556 563 1158 Antisense
TCCGCACTGCTCTAAATGTCCTCGG 137 595 1178 Antisense
TTGCGTCGTTCAGCACTTTTTGCAG 115 701 1218 Antisense
GACTTAGCCGAGATTGATCGCCCGG 443 369 1300 Antisense
AAGGTATCATTCGTCGACTTCCATC 114 161 1348 Antisense
ACGTTGCTCTTCAAACCAGACTTTC 705 93 1460 Antisense
Sequence Source Affymetrix Proprietary Database