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[190598_at] transpanin

Description T14B4.4 /REP_DB=WormBase Gene ID /WP=CE02047 /GEN=tsp-10 /TR=Q22479 /GB=AAK31552.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation /DEF=transpanin
Cluster 6grp_highest_10_10 > 04      6grp_high1_10_10 > 21      4grp_high_8_8 > 41      6grp_highest_nonorm > 32      6grp_total > 31      4grp_total > 54      6grp_cgc > 71      6grp_high1_sub > 03      6grp_cgc_sub > 03      6grp_total_sub > Hat      6grp_rule_based > S3      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2008
1 2 3 4 range
A 1941.3
(3)
P 		927.6
(-0.2)
P 		786.9
(-0.6)
P 		31.5
(-3)
A 		1910
B 1901.7
(3)
P 		833.5
(-0.5)
P 		739
(-0.8)
P 		59.3
(-3)
P 		1842
C 2039.9
(3)
P 		910.3
(-0.5)
P 		767
(-1)
P 		108.9
(-3)
P 		1931
avr 1961
(3) 		890.5
(-0.4) 		764.3
(-0.8) 		66.6
(-3) 		1894

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1342
1 2 3 4 5 6 range
A 1254.6
(0.4)
P 		1270.4
(0.4)
P 		1843.1
(3)
P 		1273.9
(0.5)
P 		808.5
(-1.6)
P 		501.2
(-3)
P 		1342
B 1258.6
(0.9)
P 		1454.1
(2)
P 		1641.2
(3)
P 		1175.4
(0.5)
P 		936.9
(-0.8)
P 		541.2
(-3)
P 		1100
C 1231.1
(1.3)
P 		1473.2
(2.9)
P 		1493.4
(3)
P 		1494.2
(3)
P 		726.5
(-2)
P 		575.8
(-3)
P 		918
avr 1248.1
(0.8) 		1399.2
(1.6) 		1659.2
(3) 		1314.5
(1.2) 		824
(-1.5) 		539.4
(-3) 		1120
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 702
1 2 3 4 range
A 706.8
(3)
P 		201.4
(-1.3)
P 		205.7
(-1.3)
P 		4.6
(-3)
A 		702
B 606.4
(3)
P 		205.8
(-1)
P 		171.2
(-1.4)
P 		12.6
(-3)
P 		594
C 675.2
(3)
P 		261.7
(-0.8)
P 		267.3
(-0.7)
P 		18.4
(-3)
P 		657
avr 662.8
(3) 		223
(-1.1) 		214.7
(-1.1) 		11.9
(-3) 		651

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 362
1 2 3 4 5 6 range
A 231.3
(-1)
P 		451.8
(3)
P 		401.4
(2.1)
P 		323.1
(0.7)
P 		244
(-0.8)
P 		122
(-3)
P 		330
B 437.9
(2)
P 		484
(3)
P 		398.5
(1.2)
P 		311.3
(-0.7)
P 		380.6
(0.8)
P 		201.8
(-3)
P 		282
C 456.3
(3)
P 		449.5
(2.8)
P 		380.1
(1.3)
P 		300.5
(-0.5)
P 		235.1
(-2)
P 		192.8
(-3)
P 		264
avr 375.2
(1.2) 		461.8
(3) 		393.3
(1.6) 		311.6
(-0.1) 		286.6
(-0.6) 		172.2
(-3) 		290
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 190598_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4094
Sequence Type Exemplar sequence
Representative Public ID T14B4.4 NCBI
Target Description T14B4.4 /REP_DB=WormBase Gene ID /WP=CE02047 /GEN=tsp-10 /TR=Q22479 /GB=AAK31552.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation /DEF=transpanin
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062968(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062968 NCBI Caenorhabditis elegans T14B4.4 (transpanin) mRNA, complete cds. 11/11 None
SNAP00000000076 ENSEMBL cdna:SNAP chromosome:CEL140:II:6718525:6720117:1 11/11 None
GENEFINDER00000000089 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:6716897:6719919:1 9/11 None
T14B4.4 ENSEMBL cdna:known chromosome:CEL140:II:6718500:6720117:1 gene:T14B4.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:6718521-6720114(+) 99.19 100.0
Public Domain and Genome References
Gene Title transpanin
Gene Symbol tsp-10
Ensembl T14B4.4
Entrez Gene 192063 Entrez gene
SwissProt Q22479 EMBL-EBI
WormBase CE02047 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
16021 integral to membrane inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast NP_495369 T14B4.4 [Caenorhabditis elegans] gb|AAK31552.1| Tetraspanin family protein 10 [Caenorhabditis elegans] 1.0E-128
blast NP_495369 T14B4.4 [Caenorhabditis elegans] gb|AAK31552.1| Tetraspanin family protein 10 [Caenorhabditis elegans] 1.0E-115
blast CAE66036 Hypothetical protein CBG11232 [Caenorhabditis briggsae] 1.0E-106
blast CAE66036 Hypothetical protein CBG11232 [Caenorhabditis briggsae] 1.0E-92
blast NP_495368 T14B4.5 [Caenorhabditis elegans] gb|AAK31553.1| Hypothetical protein T14B4.5 [Caenorhabditis elegans] 1.0E-77
blast AAH53225 Hypothetical protein MGC64051 [Danio rerio] ref|NP_956665.1| hypothetical protein LOC393342 [Danio rerio] 2.0E-9
Protein Domains
Database ID Description E-Value
Pfam IPR000301 EMBL-EBI CD9/CD37/CD63 antigen 1.4E-8
Pfam IPR000301 EMBL-EBI CD9/CD37/CD63 antigen 1.4E-8
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_495369.1 4 10-32,60-82,92-114,211-233
T14B4.4 4 10-32,60-82,92-114,211-233
SNAP00000000076 4 10-32,60-82,92-114,211-233
GENEFINDER00000000089 5 30-52,89-108,173-195,223-245,252-274
Sequence
Target Sequence 
>C. ELEGANS:190598_AT
cattttccacgtatgcccaacaggataatgatttcttagagttgaaacgtctagatatga
tttttggattgttcgttgctgctgcctgtgtgcttgttatttccttcctcgtagcaactg
tatccgttctccgacacaattcgtttttgctgaaagcctactgtgcaatggttgctctta
tgattgtggttcaactagttgatggtcttctagcttttacatattctgatcaagtaaatc
aattggcttctgacgattttatgtacgaatcattgtcgaaagctgctcaaaaaaccatcc
caccaattggatcactttcctctgacgccgaagttcagttttgggcaaatactcaagatt
tatttggttgttgtggagtttacaattccacggattggtcagtgttttggggagtaactg
gaactaacaacgacttgcaagcattgcattgttatccacaacattttaatgatggttgcg
agaaaactatcagaaataaaatttcgtcgaatgctcaatacctcggagcagcttccatgg
gagttttggtagttgagataattgcgagtttcttggccggatatcgtgcatacac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CATTTTCCACGTATGCCCAACAGGA 394 215 131 Antisense
TTTTGGATTGTTCGTTGCTGCTGCC 158 679 192 Antisense
GTTCTCCGACACAATTCGTTTTTGC 371 443 256 Antisense
AAAGCCTACTGTGCAATGGTTGCTC 279 125 283 Antisense
AGTTGATGGTCTTCTAGCTTTTACA 381 63 327 Antisense
CAATTGGATCACTTTCCTCTGACGC 705 179 434 Antisense
GCAAGCATTGCATTGTTATCCACAA 154 321 567 Antisense
AATTTCGTCGAATGCTCAATACCTC 38 175 630 Antisense
GGAGCAGCTTCCATGGGAGTTTTGG 329 521 655 Antisense
GATAATTGCGAGTTTCTTGGCCGGA 437 421 687 Antisense
TCTTGGCCGGATATCGTGCATACAC 76 619 701 Antisense
Sequence Source Affymetrix Proprietary Database