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[190595_at]

Description Y38C1BA.3_rc /REP_DB=WormBase Gene ID /WP=CE21569 /TR=Q9N527 /GB=AAF60502.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation /REVCOMP /DEF=collagen
Cluster 6grp_total > 81      4grp_total > 50      6grp_cgc > 86      6grp_cgc_sub > 04      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 99
1 2 3 4 range
A 19
(-2.1)
A 		8.8
(-3)
A 		73.8
(3)
A 		22.4
(-1.7)
A 		65
B 36
(-1.6)
A 		108.2
(3)
A 		13.8
(-3)
A 		33.1
(-1.8)
A 		94
C 10.5
(-3)
A 		73.3
(3)
A 		42.5
(0.1)
A 		15
(-2.6)
A 		63
avr 21.8
(-3) 		63.4
(3) 		43.4
(0.1) 		23.5
(-2.8) 		42

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 98
1 2 3 4 5 6 range
A 12.1
(-2.2)
A 		54.2
(1.6)
A 		25.5
(-1)
A 		37.4
(0.1)
A 		69.7
(3)
A 		3.4
(-3)
A 		66
B 32.1
(-3)
A 		34.8
(-2.8)
A 		34.4
(-2.8)
A 		101.8
(3)
P 		56.1
(-0.9)
A 		43.9
(-2)
P 		70
C 22.2
(-3)
A 		57.8
(1.1)
A 		48.5
(0.1)
A 		73.8
(3)
A 		52.5
(0.5)
A 		32.1
(-1.8)
A 		52
avr 22.1
(-3) 		48.9
(0.3) 		36.1
(-1.3) 		71
(3) 		59.4
(1.6) 		26.5
(-2.5) 		49
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 25
1 2 3 4 range
A 6.9
(-1.3)
A 		1.9
(-3)
A 		19.3
(3)
A 		3.3
(-2.5)
A 		17
B 11.5
(-0.9)
A 		26.7
(3)
A 		3.2
(-3)
A 		7
(-2)
A 		24
C 3.5
(-2.7)
A 		21.1
(3)
A 		14.8
(1)
A 		2.5
(-3)
A 		19
avr 7.3
(-1.5) 		16.6
(3) 		12.4
(1) 		4.3
(-3) 		12

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 26
1 2 3 4 5 6 range
A 2.2
(-2.6)
A 		19.3
(2.5)
A 		5.5
(-1.6)
A 		9.5
(-0.4)
A 		21
(3)
A 		0.8
(-3)
A 		20
B 11.2
(-2.1)
A 		11.6
(-2)
A 		8.4
(-3)
A 		27
(3)
P 		22.8
(1.6)
A 		16.4
(-0.4)
P 		19
C 8.2
(-3)
A 		17.6
(3)
A 		12.3
(-0.4)
A 		14.8
(1.2)
A 		17
(2.6)
A 		10.8
(-1.3)
A 		9
avr 7.2
(-3) 		16.2
(1.1) 		8.7
(-2.3) 		17.1
(1.5) 		20.3
(3) 		9.3
(-2) 		13
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 190595_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.28146
Sequence Type Exemplar sequence
Representative Public ID Y38C1BA.3 NCBI
Target Description Y38C1BA.3_rc /REP_DB=WormBase Gene ID /WP=CE21569 /TR=Q9N527 /GB=AAF60502.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation /REVCOMP /DEF=collagen
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Design Representative Id based pipeline to a Affymetrix Proprietary Database identifier using 1 transcript(s).
Annotation Grade This is a grade R annotation.
Annotation Transcript Cluster (# of Matching Probes) Y38C1BA.3
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
Y38C1BA.3 Y38C1BA.3_rc /REP_DB=WormBase Gene ID /WP=CE21569 /TR=Q9N527 /GB=AAF60502.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation /REVCOMP /DEF=collagen A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_067737 11/11 Negative Strand Matching Probes A 
SNAP00000017748 11/11 Negative Strand Matching Probes None
GENEFINDER00000017752 11/11 Negative Strand Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:1817661-1820254(+) 96.58 100.0
Public Domain and Genome References
Ensembl Y38C1BA.3
Sequence
Target Sequence 
>C. ELEGANS:190595_AT
gatggtgtcgattgagccggtcgtcctggttctcccttctctccgtcgtttccaggtgct
ccagagtctccggatgctccatttggtccgacaggtcccggtgttcctggggatcctggc
cgtcctggattacctggccgtcctggttgtccactgtttccagttggtccttgtggtcct
ggtggtcctggtgggcatggattgcatggtggaacgtcttgctcttcgcacacaatcggt
ggtcttccaggggttcctggtcgtcctggtgctcctggaactccaggctttccgttacgt
cctgggagtccgggccgccctgggtgtcctggcttacagcacccggcgcaaccgaccgcc
tgacgcttgttgcggatggtggtcaggtttccagcgatcgcggcggcaatcggcttcttg
tgactgatttcagacatgatatctctggcggtcgacttgcagaaagtcatgtctcgtttc
gtttgc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATGGTGTCGATTGAGCCGGTCGTC 50 409 275 Antisense
TCTCCGGATGCTCCATTTGGTCCGA 453 609 341 Antisense
GTTGTCCACTGTTTCCAGTTGGTCC 606 435 420 Antisense
TGCATGGTGGAACGTCTTGCTCTTC 317 579 477 Antisense
TTCGCACACAATCGGTGGTCTTCCA 679 695 499 Antisense
CTGGGTGTCCTGGCTTACAGCACCC 645 239 594 Antisense
ACCGCCTGACGCTTGTTGCGGATGG 686 89 629 Antisense
GATGGTGGTCAGGTTTCCAGCGATC 72 409 649 Antisense
GGCAATCGGCTTCTTGTGACTGATT 569 533 679 Antisense
GACATGATATCTCTGGCGGTCGACT 65 369 707 Antisense
GAAAGTCATGTCTCGTTTCGTTTGC 684 359 736 Antisense
Sequence Source Affymetrix Proprietary Database