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[190593_at] Zinc finger, C2H2 type

Description Y48E1B.7 /REP_DB=WormBase Gene ID /WP=CE14864 /TR=O45950 /GB=CAB07693.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=Zinc finger, C2H2 type
Cluster 6grp_total > 02      4grp_total > 51      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 70
1 2 3 4 range
A 76.8
(3)
A 		58.9
(1.1)
A 		21.4
(-3)
A 		48.2
(-0.1)
A 		55
B 7.6
(-3)
A 		73.5
(2.7)
A 		76.8
(3)
A 		41.5
(-0.1)
A 		69
C 77.7
(3)
A 		64
(0.7)
A 		69.6
(1.6)
A 		42.6
(-3)
A 		35
avr 54
(-0.2) 		65.5
(3) 		55.9
(0.3) 		44.1
(-3) 		21

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 67
1 2 3 4 5 6 range
A 77
(3)
A 		71.9
(2.3)
A 		31.5
(-3)
A 		35.3
(-2.5)
A 		48.6
(-0.7)
A 		59.4
(0.7)
A 		46
B 14.9
(-2.9)
A 		60.3
(3)
A 		56.8
(2.5)
A 		14
(-3)
A 		41.1
(0.5)
A 		25.8
(-1.5)
A 		46
C 79.6
(2.8)
A 		64.6
(1.4)
A 		58.7
(0.8)
A 		81.4
(3)
A 		61.2
(1)
A 		20
(-3)
A 		61
avr 57.2
(1.3) 		65.6
(3) 		49
(-0.3) 		43.6
(-1.3) 		50.3
(-0) 		35.1
(-3) 		31
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 26
1 2 3 4 range
A 28
(3)
A 		12.8
(-1.1)
A 		5.6
(-3)
A 		7
(-2.6)
A 		22
B 2.4
(-3)
A 		18.2
(3)
A 		17.8
(2.8)
A 		8.9
(-0.5)
A 		16
C 25.7
(3)
A 		18.4
(0.6)
A 		24.2
(2.5)
A 		7.2
(-3)
A 		19
avr 18.7
(3) 		16.5
(1.8) 		15.9
(1.5) 		7.7
(-3) 		11

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 26
1 2 3 4 5 6 range
A 14.2
(-0.7)
A 		25.6
(3)
A 		6.9
(-3)
A 		9
(-2.3)
A 		14.7
(-0.5)
A 		14.5
(-0.6)
A 		19
B 5.2
(-2.5)
A 		20.1
(3)
A 		13.8
(0.7)
A 		3.7
(-3)
A 		16.7
(1.8)
A 		9.6
(-0.8)
A 		16
C 29.5
(3)
A 		19.7
(0.4)
A 		14.9
(-0.8)
A 		16.4
(-0.4)
A 		19.8
(0.4)
A 		6.7
(-3)
A 		23
avr 16.3
(0.3) 		21.8
(3) 		11.9
(-1.9) 		9.7
(-3) 		17.1
(0.7) 		10.3
(-2.7) 		12
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 190593_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3358
Sequence Type Exemplar sequence
Representative Public ID Y48E1B.7 NCBI
Target Description Y48E1B.7 /REP_DB=WormBase Gene ID /WP=CE14864 /TR=O45950 /GB=CAB07693.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=Zinc finger, C2H2 type
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064451(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064451 NCBI Caenorhabditis elegans Y48E1B.7 (Y48E1B.7) mRNA, complete cds. 11/11 None
SNAP00000010060 ENSEMBL cdna:SNAP chromosome:CEL140:II:13575957:13588903:1 10/11 None
GENEFINDER00000010073 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:13575827:13588739:1 11/11 None
Y48E1B.7 ENSEMBL cdna:known chromosome:CEL140:II:13577651:13584386:1 gene:Y48E1B.7 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_075643 7/11 Cross Hyb Matching Probes None
GENEFINDER00000003769 6/11 Cross Hyb Matching Probes None
SNAP00000003749 6/11 Cross Hyb Matching Probes None
AC8.5 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:13577647-13584383(+) 97.99 100.0
Public Domain and Genome References
Gene Title Zinc finger, C2H2 type
Ensembl Y48E1B.7
Entrez Gene 190028 Entrez gene
SwissProt O45950 EMBL-EBI
WormBase CE14864 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
5634 nucleus inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3676 nucleic acid binding inferred from electronic annotation QuickGO AmiGO
8270 zinc ion binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB07693 Hypothetical protein Y48E1B.7 [Caenorhabditis elegans] ref|NP_496852.1| Y48E1B.7 [Caenorhabditis elegans] 0.0
blast CAE73328 Hypothetical protein CBG20757 [Caenorhabditis briggsae] 0.0
blast CAB07694 Hypothetical protein Y48E1B.8 [Caenorhabditis elegans] ref|NP_496853.1| Y48E1B.8 [Caenorhabditis elegans] 0.0
blast CAE73327 Hypothetical protein CBG20756 [Caenorhabditis briggsae] 1.0E-162
Protein Domains
Database ID Description E-Value
Pfam IPR005069 EMBL-EBI Protein of unknown function DUF271 1.0E-126
Pfam IPR005069 EMBL-EBI Protein of unknown function DUF271 1.0E-126
Trans Membrane
ID Number Of Domains Domain Boundaries
SNAP00000010060 2 708-730,1051-1073
GENEFINDER00000010073 2 822-841,870-892
Sequence
Target Sequence 
>C. ELEGANS:190593_AT
aaaatgctctacgactcgttcatccatcgcctatcaagctcaaacgaggtgatcaaacaa
atcgactaccgcgacctgatccccaacgagagcaccctgctgaagctgaaaaaagcctat
aactacctggcaaagatcgagaacgagcttctgaacccgcgccgagagcagatcaatccg
atccgcgtcacctcatacatcagaatgatggaagaagaagcaaggctgatcgagaggact
cgacaggcggccagtgctcctggagcagctgctggagatgagattgatgttgttgggatt
gacgaggaggactaccaccatcatcatcatatggatcttcatgaagttgtggaagaggaa
gaagttgggtatcatcaggaggatctcgagctggagcaggagcttcaagagcatgtggaa
gaggattatctgccggtggaagaggaattggtggaagaggagctggtggtggaagaagaa
gctcttccagtggagcagcaccaggaagaggaggaggacggagagccgacggtcaccaga
gctggacgagtt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAAATGCTCTACGACTCGTTCATCC 440 133 1417 Antisense
TCCATCGCCTATCAAGCTCAAACGA 386 591 1439 Antisense
CAAACAAATCGACTACCGCGACCTG 231 191 1470 Antisense
CGAGAGCACCCTGCTGAAGCTGAAA 21 249 1503 Antisense
ATCGAGAACGAGCTTCTGAACCCGC 429 33 1552 Antisense
AGAGCAGATCAATCCGATCCGCGTC 537 69 1581 Antisense
TGACGAGGAGGACTACCACCATCAT 322 571 1716 Antisense
GAGGATCTCGAGCTGGAGCAGGAGC 534 403 1795 Antisense
AGAAGCTCTTCCAGTGGAGCAGCAC 484 73 1893 Antisense
AGGAGGACGGAGAGCCGACGGTCAC 249 55 1928 Antisense
GACGGTCACCAGAGCTGGACGAGTT 649 375 1944 Antisense
Sequence Source Affymetrix Proprietary Database