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[190590_s_at] aldehyde dehydrogenase

Description C54D1.4 /REP_DB=WormBase Gene ID /WP=CE06980 /TR=Q18822 /GB=AAC48151.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation /DEF=aldehyde dehydrogenase
Cluster 6grp_highest_10_10 > 15      6grp_high1_10_10 > 40      6grp_highest_nonorm > 61      6grp_total > 41      4grp_total > 62      6grp_highest_sub > 03      6grp_cgc > 71      6grp_high1_sub > 03      6grp_cgc_sub > 03      6grp_total_sub > Hat      6grp_rule_based > S3      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 396
1 2 3 4 range
A 392.2
(3)
P 		263
(0.7)
P 		222.1
(-0.1)
P 		62.1
(-3)
A 		330
B 457.9
(3)
P 		213.1
(-1.3)
P 		279.6
(-0.2)
P 		120.1
(-3)
A 		338
C 385.1
(3)
P 		295.9
(1.3)
P 		283.7
(1.1)
P 		63.5
(-3)
A 		322
avr 411.7
(3) 		257.3
(0.2) 		261.8
(0.3) 		81.9
(-3) 		330

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 498
1 2 3 4 5 6 range
A 391.3
(-0.1)
P 		428.8
(0.4)
P 		639.1
(3)
P 		455.2
(0.7)
P 		216.9
(-2.2)
P 		153.1
(-3)
P 		486
B 514.9
(1.6)
P 		375.4
(-0.1)
P 		624
(3)
P 		449.9
(0.8)
P 		249
(-1.7)
P 		141.2
(-3)
P 		483
C 310.2
(-0.4)
P 		401.2
(1.7)
P 		455.9
(3)
P 		409.7
(1.9)
P 		201.9
(-3)
P 		206.4
(-2.9)
P 		254
avr 405.5
(0.5) 		401.8
(0.5) 		573
(3) 		438.3
(1) 		222.6
(-2.2) 		166.9
(-3) 		406
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 137
1 2 3 4 range
A 142.8
(3)
P 		57.1
(-0.8)
P 		58.1
(-0.8)
P 		9.1
(-3)
A 		134
B 146
(3)
P 		52.6
(-1.7)
P 		64.8
(-1)
P 		25.6
(-3)
A 		120
C 127.5
(3)
P 		85.1
(0.8)
P 		98.9
(1.5)
P 		10.7
(-3)
A 		117
avr 138.8
(3) 		64.9
(-0.6) 		73.9
(-0.1) 		15.1
(-3) 		124

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 142
1 2 3 4 5 6 range
A 72.1
(-1.2)
P 		152.5
(3)
P 		139.2
(2.3)
P 		115.4
(1.1)
P 		65.4
(-1.5)
P 		37.3
(-3)
P 		115
B 179.2
(3)
P 		125
(0.4)
P 		151.5
(1.7)
P 		119.2
(0.2)
P 		101.2
(-0.7)
P 		52.7
(-3)
P 		127
C 115
(2.2)
P 		122.4
(3)
P 		116
(2.3)
P 		82.4
(-1.2)
P 		65.3
(-3)
P 		69.1
(-2.6)
P 		57
avr 122.1
(2) 		133.3
(2.8) 		135.6
(3) 		105.7
(0.8) 		77.3
(-1.2) 		53
(-3) 		83
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 190590_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17213
Sequence Type Exemplar sequence
Representative Public ID C54D1.4 NCBI
Target Description C54D1.4 /REP_DB=WormBase Gene ID /WP=CE06980 /TR=Q18822 /GB=AAC48151.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation /DEF=aldehyde dehydrogenase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076802(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076802 NCBI Caenorhabditis elegans ALdehyde deHydrogenase family member (alh-10) (alh-10) mRNA, complete cds. 11/11 None
SNAP00000023885 ENSEMBL cdna:SNAP chromosome:CEL140:X:7140522:7143526:-1 11/11 None
GENEFINDER00000023892 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:7140522:7143526:-1 11/11 None
C54D1.4.2 ENSEMBL cdna:known chromosome:CEL140:X:7140470:7143928:-1 gene:C54D1.4 11/11 None
C54D1.4.1 ENSEMBL cdna:known chromosome:CEL140:X:7140470:7143590:-1 gene:C54D1.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:7140520-7143525(-) 100.0 100.0
Public Domain and Genome References
Gene Title aldehyde dehydrogenase
Gene Symbol alh-10
Ensembl C54D1.4
Entrez Gene 180979 Entrez gene
SwissProt Q18822 EMBL-EBI
WormBase CE06980 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE:1594178_AT similar to aldehyde dehydrogenase 8A1 isoform 2 cfa
CANINE:1585515_AT similar to aldehyde dehydrogenase 8A1 isoform 2 cfa
CANINE_2:CFA.15715.1.A1_S_AT similar to aldehyde dehydrogenase 8A1 isoform 2 cfa
CHICKEN:GGA.8152.1.S1_AT aldehyde dehydrogenase 8 family, member A1 gga
CHICKEN:GGA.8152.2.S1_A_AT aldehyde dehydrogenase 8 family, member A1 gga
HG-U133_PLUS_2:220148_AT aldehyde dehydrogenase 8 family, member A1 hs
HG-U133A:220148_AT aldehyde dehydrogenase 8 family, member A1 hs
HG-FOCUS:220148_AT aldehyde dehydrogenase 8 family, member A1 hs
HG-U133A_2:220148_AT aldehyde dehydrogenase 8 family, member A1 hs
HU35KSUBB:RC_T98676_AT aldehyde dehydrogenase 8 family, member A1 hs
U133_X3P:G12007647_3P_AT aldehyde dehydrogenase 8 family, member A1 hs
HG-U95B:48371_AT aldehyde dehydrogenase 8 family, member A1 hs
MOUSE430_2:1427337_AT aldehyde dehydrogenase 8 family, member A1 mm
MOE430A:1427337_AT aldehyde dehydrogenase 8 family, member A1 mm
MOUSE430A_2:1427337_AT aldehyde dehydrogenase 8 family, member A1 mm
MG-U74BV2:113090_AT aldehyde dehydrogenase 8 family, member A1 mm
MOE430A:1427336_AT aldehyde dehydrogenase 8 family, member A1 mm
MOUSE430A_2:1427336_AT aldehyde dehydrogenase 8 family, member A1 mm
MOUSE430_2:1427336_AT aldehyde dehydrogenase 8 family, member A1 mm
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
8152 metabolism inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
16491 oxidoreductase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAC48151 Aldehyde dehydrogenase protein 10 [Caenorhabditis elegans] ref|NP_509203.1| ALdehyde deHydrogenase family member (alh-10) [Caenorhabditis elegans] 0.0
blast CAE65848 Hypothetical protein CBG10981 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR002086 EMBL-EBI Aldehyde dehydrogenase 1.0E-126
Sequence
Target Sequence 
>C. ELEGANS:190590_S_AT
tactgtgggagatccaactactcaagttcaaatcggagccatgaattcaaaagtgcacta
cgagaaagtgaaaagctacattgagcttgccaaaaaagaaggcgccgatattctttgtgg
aggcgtgacgaccattcaaaatgggtgtgagaatggctattttattacacctacagtaat
tgttggtttgcatgacgcttcgaaagttatgacagatgaaatatttggtccagttgtgtg
catcacgcccttcgacacagcggaggaagtaattgaacgcgcaaactccactccctatgg
cttgtcagcaacagtttggagttcagatagtgatgaattgttaaacacggccaacgagct
gagagccggaacagtttggtgcaacacttggctggctcgcgacctgagcatgccgtttgg
tggatgtaagcaatctggaaatggaagagaaggtctccacgactcactccacttttactc
cgatgcaaaaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TACTGTGGGAGATCCAACTACTCAA 34 647 1011 Antisense
TGTGGAGGCGTGACGACCATTCAAA 202 553 1126 Antisense
TGTTGGTTTGCATGACGCTTCGAAA 83 563 1191 Antisense
TTGGTCCAGTTGTGTGCATCACGCC 352 709 1235 Antisense
CGCCCTTCGACACAGCGGAGGAAGT 374 203 1256 Antisense
GTAATTGAACGCGCAAACTCCACTC 455 463 1279 Antisense
TAAACACGGCCAACGAGCTGAGAGC 425 639 1352 Antisense
GAGAGCCGGAACAGTTTGGTGCAAC 238 395 1371 Antisense
AGTTTGGTGCAACACTTGGCTGGCT 222 63 1383 Antisense
CGACCTGAGCATGCCGTTTGGTGGA 495 249 1410 Antisense
CTCCACTTTTACTCCGATGCAAAAA 645 235 1477 Antisense
Sequence Source Affymetrix Proprietary Database