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[190589_at] ser/thr-protein kinase

Description ZC581.2 /REP_DB=WormBase Gene ID /WP=CE15237 /TR=O01773 /GB=AAB54140.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation /DEF=ser-thr-protein kinase
Cluster 6grp_total > 79      4grp_total > 24      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 63
1 2 3 4 range
A 36
(-0.1)
A 		54.6
(3)
A 		53.3
(2.8)
A 		19.1
(-3)
A 		36
B 16.4
(-3)
A 		44.3
(1.5)
A 		53.2
(3)
A 		39.9
(0.8)
A 		37
C 24.9
(-1.8)
A 		12
(-3)
A 		16.5
(-2.6)
A 		75
(3)
A 		63
avr 25.8
(-3) 		37
(0.6) 		41
(1.8) 		44.7
(3) 		19

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 87
1 2 3 4 5 6 range
A 5.9
(-3)
A 		66.5
(1.4)
A 		24.2
(-1.7)
A 		7.2
(-2.9)
A 		40.8
(-0.5)
A 		88.1
(3)
A 		82
B 47.4
(-0.8)
A 		59.8
(0.3)
A 		24.5
(-3)
A 		25.9
(-2.9)
A 		35.4
(-2)
A 		88.3
(3)
M 		64
C 55.5
(0.4)
A 		34.8
(-1.1)
A 		7.4
(-3)
A 		17.4
(-2.3)
A 		37
(-0.9)
A 		92.4
(3)
M 		85
avr 36.3
(-1.4) 		53.7
(0) 		18.7
(-2.8) 		16.8
(-3) 		37.7
(-1.3) 		89.6
(3) 		73
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 11
1 2 3 4 range
A 13.1
(2.6)
A 		11.8
(1.9)
A 		13.9
(3)
A 		2.8
(-3)
A 		11
B 5.2
(-3)
A 		10.9
(1.8)
A 		12.3
(3)
A 		8.5
(-0.2)
A 		7
C 8.2
(0.1)
A 		3.4
(-3)
A 		5.8
(-1.5)
A 		12.7
(3)
A 		9
avr 8.8
(-1.2) 		8.7
(-1.4) 		10.7
(3) 		8
(-3) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 32
1 2 3 4 5 6 range
A 1.1
(-3)
A 		23.6
(3)
A 		5.3
(-1.9)
A 		1.8
(-2.8)
A 		12.3
(-0)
A 		21.4
(2.4)
A 		23
B 16.5
(-0.7)
A 		19.9
(0.1)
A 		6
(-3)
A 		6.8
(-2.8)
A 		14.4
(-1.1)
A 		32.9
(3)
M 		27
C 20.6
(0.9)
A 		10.6
(-1.2)
A 		1.9
(-3)
A 		3.5
(-2.7)
A 		12
(-0.9)
A 		30.9
(3)
M 		29
avr 12.7
(-0.9) 		18
(0.4) 		4.4
(-2.9) 		4
(-3) 		12.9
(-0.8) 		28.4
(3) 		24
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 190589_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1575
Sequence Type Exemplar sequence
Representative Public ID ZC581.2 NCBI
Target Description ZC581.2 /REP_DB=WormBase Gene ID /WP=CE15237 /TR=O01773 /GB=AAB54140.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation /DEF=ser-thr-protein kinase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059511(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059511 NCBI Caenorhabditis elegans ZC581.2 (ZC581.2) mRNA, complete cds. 11/11 None
GENEFINDER00000015889 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:6659405:6666403:1 11/11 None
SNAP00000015884 ENSEMBL cdna:SNAP chromosome:CEL140:I:6663849:6666169:1 11/11 None
ZC581.2 ENSEMBL cdna:known chromosome:CEL140:I:6663849:6665640:1 gene:ZC581.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:6663777-6666098(+) 98.67 100.0
Public Domain and Genome References
Gene Title ser/thr-protein kinase
Ensembl ZC581.2
Entrez Gene 191200 Entrez gene
SwissProt O01773 EMBL-EBI
WormBase CE36773 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6468 protein amino acid phosphorylation inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4672 protein kinase activity inferred from electronic annotation QuickGO AmiGO
4674 protein serine/threonine kinase activity inferred from electronic annotation QuickGO AmiGO
5524 ATP binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAB54141 Hypothetical protein ZC581.3 [Caenorhabditis elegans] ref|NP_491911.2| ZC581.3 [Caenorhabditis elegans] 0.0
blast AAB54140 Hypothetical protein ZC581.2 [Caenorhabditis elegans] ref|NP_491912.2| ZC581.2 [Caenorhabditis elegans] 1.0E-180
blast AAB54140 Hypothetical protein ZC581.2 [Caenorhabditis elegans] ref|NP_491912.2| ZC581.2 [Caenorhabditis elegans] 1.0E-179
blast CAE67254 Hypothetical protein CBG12694 [Caenorhabditis briggsae] 1.0E-175
blast AAB54140 Hypothetical protein ZC581.2 [Caenorhabditis elegans] ref|NP_491912.2| ZC581.2 [Caenorhabditis elegans] 1.0E-172
blast CAE64307 Hypothetical protein CBG08984 [Caenorhabditis briggsae] 1.0E-162
blast CAE64307 Hypothetical protein CBG08984 [Caenorhabditis briggsae] 1.0E-150
blast CAE65967 Hypothetical protein CBG11150 [Caenorhabditis briggsae] 1.0E-140
Protein Domains
Database ID Description E-Value
Pfam IPR000719 EMBL-EBI Protein kinase 0.025
Pfam IPR000719 EMBL-EBI Protein kinase 0.016
Pfam IPR000719 EMBL-EBI Protein kinase 0.025
Pfam IPR000719 EMBL-EBI Protein kinase 0.016
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000015889 1 653-675
Sequence
Target Sequence 
>C. ELEGANS:190589_AT
gccaaaccacagtcgcacgaatcatgatccaaggaatcgctgcacttcgggatgtccatt
ctcttggttacattcaccgagacgtgaaacctgcaaatatgtgctttggagttactcaaa
gtactcgtcatgtgctcaagctagtcgactatgggatggttcgaagattcaagaacgtgg
atggaacacgtcgtaaacagagatacaaacctggttttagagggacactgcgctactcgt
ctgtgcgtgtccacgatggaaaagaacagaccccagttgatgactttgtgtcaatggcct
actctggggctgagcttctccttgtcaaccttccctggaaactggtgagcactgatgaca
tccgacagactaaagtggactttaatactccaaactctccatactt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCCAAACCACAGTCGCACGAATCAT 20 279 443 Antisense
TCCAAGGAATCGCTGCACTTCGGGA 157 585 470 Antisense
ACTTCGGGATGTCCATTCTCTTGGT 654 101 486 Antisense
GTACTCGTCATGTGCTCAAGCTAGT 134 459 563 Antisense
TTTAGAGGGACACTGCGCTACTCGT 80 563 658 Antisense
TCGTCTGTGCGTGTCCACGATGGAA 362 605 679 Antisense
GACCCCAGTTGATGACTTTGTGTCA 465 381 711 Antisense
GTCAATGGCCTACTCTGGGGCTGAG 588 463 732 Antisense
GTCAACCTTCCCTGGAAACTGGTGA 15 13 766 Antisense
ACTGGTGAGCACTGATGACATCCGA 247 97 783 Antisense
TTAATACTCCAAACTCTCCATACTT 311 683 824 Antisense
Sequence Source Affymetrix Proprietary Database