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[190587_at] transpanin

Description F59G1.2 /REP_DB=WormBase Gene ID /WP=CE25926 /GEN=tsp-18 /TR=Q21052 /GB=AAK31532.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation /DEF=transpanin
Cluster 6grp_total > 96      4grp_total > 26      6grp_cgc > 68      6grp_cgc_sub > In      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 78
1 2 3 4 range
A 22.9
(-3)
A 		53.6
(-0.6)
A 		35.4
(-2)
A 		101
(3)
M 		78
B 31.6
(-3)
A 		69.4
(3)
A 		65
(2.3)
A 		45.7
(-0.8)
A 		38
C 44.5
(-3)
A 		54.7
(-1.2)
M 		44.6
(-3)
A 		78.2
(3)
A 		34
avr 33
(-3) 		59.2
(0.7) 		48.3
(-0.8) 		75
(3) 		42

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 67
1 2 3 4 5 6 range
A 68.1
(2.4)
A 		35.7
(-2.6)
A 		33.4
(-3)
A 		38.4
(-2.2)
A 		66.3
(2.1)
M 		71.9
(3)
P 		39
B 42.4
(1)
A 		5.2
(-3)
A 		41.8
(0.9)
A 		53.1
(2.1)
A 		61.4
(3)
A 		52.4
(2)
P 		56
C 18.1
(-2.5)
A 		48.3
(1.4)
A 		14.5
(-3)
A 		48.9
(1.5)
A 		22.6
(-1.9)
A 		60.3
(3)
P 		46
avr 42.9
(-0.5) 		29.7
(-3) 		29.9
(-3) 		46.8
(0.2) 		50.1
(0.8) 		61.5
(3) 		32
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 9
1 2 3 4 range
A 8.3
(-3)
A 		11.6
(0)
A 		9.3
(-2.1)
A 		14.8
(3)
M 		7
B 10.1
(-2.7)
A 		17.1
(3)
A 		15.1
(1.4)
A 		9.7
(-3)
A 		7
C 14.7
(0.6)
A 		15.7
(3)
M 		15.5
(2.5)
A 		13.2
(-3)
A 		3
avr 11
(-3) 		14.8
(3) 		13.3
(0.6) 		12.6
(-0.5) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 23
1 2 3 4 5 6 range
A 12.6
(-0.5)
A 		12.7
(-0.4)
A 		7.3
(-3)
A 		9.7
(-1.9)
A 		20
(3)
M 		17.5
(1.8)
P 		13
B 14.8
(0.4)
A 		1.7
(-3)
A 		10.2
(-0.8)
A 		14.1
(0.2)
A 		25
(3)
A 		19.5
(1.6)
P 		23
C 6.7
(-1.9)
A 		14.7
(1)
A 		3.7
(-3)
A 		9.8
(-0.8)
A 		7.3
(-1.7)
A 		20.2
(3)
P 		17
avr 11.4
(-0.9) 		9.7
(-1.7) 		7.1
(-3) 		11.2
(-1) 		17.4
(2.2) 		19.1
(3) 		12
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 190587_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5305
Sequence Type Exemplar sequence
Representative Public ID F59G1.2 NCBI
Target Description F59G1.2 /REP_DB=WormBase Gene ID /WP=CE25926 /GEN=tsp-18 /TR=Q21052 /GB=AAK31532.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation /DEF=transpanin
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062777(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062777 NCBI Caenorhabditis elegans F59G1.2 (transpanin) mRNA, complete cds. 11/11 None
SNAP00000033450 ENSEMBL cdna:SNAP chromosome:CEL140:II:5905577:5907038:1 11/11 None
GENEFINDER00000033461 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:5904556:5906271:1 11/11 None
F59G1.2 ENSEMBL cdna:known chromosome:CEL140:II:5904556:5906271:1 gene:F59G1.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:5904552-5906268(+) 100.0 100.0
Public Domain and Genome References
Gene Title transpanin
Gene Symbol tsp-18
Ensembl F59G1.2
Entrez Gene 192068 Entrez gene
SwissProt Q21052 EMBL-EBI
WormBase CE25926 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK31532 Tetraspanin family protein 18 [Caenorhabditis elegans] ref|NP_495178.1| F59G1.2 [Caenorhabditis elegans] 0.0
blast T34313 hypothetical protein F59G1.2 - Caenorhabditis elegans 0.0
blast AAK31532 Tetraspanin family protein 18 [Caenorhabditis elegans] ref|NP_495178.1| F59G1.2 [Caenorhabditis elegans] 9.0E-88
blast T34313 hypothetical protein F59G1.2 - Caenorhabditis elegans 9.0E-88
blast AAK31534 Hypothetical protein F59G1.8 [Caenorhabditis elegans] ref|NP_495179.1| F59G1.8 [Caenorhabditis elegans] 4.0E-55
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_495178.1 4 15-37,61-83,103-125,256-278
F59G1.2 4 15-37,61-83,103-125,256-278
GENEFINDER00000033461 4 15-37,61-83,103-125,256-278
Sequence
Target Sequence 
>C. ELEGANS:190587_AT
acatatgctcattgattctcactcaaattcttgttacgtctagtgcaacattacatggtg
ctcgcttggaaacttcggaatcgtcgtatgcatggctcattgatgttggacaaccagatt
ctgtagctcttattaagaaactcaatccagatatccttccatctgaatttgaagcatcca
caagtgttggcaaggatgagaaagagatagaaccagagaaagacgtagatatgaatgcac
aaaccgcgttgacaaccacggcagaaactgaacatactgctactatgaatagcaccacag
ctccagttacaactacaaacactgccgaaactactgatgcaactttggtttccacttcaa
ccagcaacattggaaaattgtcaacttcgagagatgatggtgttttgagttccgactcaa
acgataaattgactaagaaaagtacagagcatccaatgaagaaggaaaaacagactaaga
acaaagtccaacttcggaaaagcacggaaacaaaacagaaaccgaacgtcgttgcaaaac
cacag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACATATGCTCATTGATTCTCACTCA 471 105 806 Antisense
TTCTCACTCAAATTCTTGTTACGTC 268 691 821 Antisense
CATGGTGCTCGCTTGGAAACTTCGG 71 209 859 Antisense
GGAATCGTCGTATGCATGGCTCATT 64 533 882 Antisense
AGAAACTCAATCCAGATATCCTTCC 280 73 941 Antisense
GAATGCACAAACCGCGTTGACAACC 180 331 1038 Antisense
TGAATAGCACCACAGCTCCAGTTAC 639 575 1091 Antisense
CAAACACTGCCGAAACTACTGATGC 569 191 1121 Antisense
TTTGGTTTCCACTTCAACCAGCAAC 126 667 1149 Antisense
ATGATGGTGTTTTGAGTTCCGACTC 19 47 1199 Antisense
ACCGAACGTCGTTGCAAAACCACAG 594 87 1326 Antisense
Sequence Source Affymetrix Proprietary Database