[Home] | [Total List]

[190585_at] OV-17 antigen precursor

Description ZK970.7 /REP_DB=WormBase Gene ID /WP=CE02407 /TR=Q23683 /GB=CAA88891.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=OV-17 antigen precursor
Cluster 6grp_highest_10_10 > 72      6grp_high1_10_10 > 37      4grp_highest_8_8 > 45      4grp_high_8_8 > 01      6grp_highest_nonorm > 03      6grp_total > 08      4grp_total > 14      6grp_highest_sub > Cu      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1159
1 2 3 4 range
A 1110.5
(1.9)
P 		398.7
(-3)
P 		410.4
(-2.9)
P 		1276.5
(3)
P 		878
B 1265.8
(2.1)
P 		339.5
(-3)
P 		438.1
(-2.5)
P 		1437.4
(3)
P 		1098
C 1498.1
(3)
P 		375.1
(-3)
P 		425.3
(-2.7)
P 		1335.2
(2.1)
P 		1123
avr 1291.5
(2.6) 		371.1
(-3) 		424.6
(-2.7) 		1349.7
(3) 		979

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 5938
1 2 3 4 5 6 range
A 7101.8
(3)
P 		2649.2
(-1.8)
P 		4438.4
(0.1)
P 		3537.9
(-0.8)
P 		1543.7
(-3)
P 		4558.8
(0.3)
P 		5558
B 5952.4
(3)
P 		2336.5
(-2)
P 		3376
(-0.5)
P 		2302
(-2)
P 		1583.8
(-3)
P 		3036
(-1)
P 		4369
C 7482
(3)
P 		2372.6
(-2.8)
P 		3678.1
(-1.3)
P 		2957.6
(-2.1)
P 		2186.9
(-3)
P 		3587.6
(-1.4)
P 		5295
avr 6845.4
(3) 		2452.8
(-2.2) 		3830.8
(-0.6) 		2932.5
(-1.6) 		1771.5
(-3) 		3727.5
(-0.7) 		5074
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 412
1 2 3 4 range
A 404.3
(3)
P 		86.6
(-3)
P 		107.3
(-2.6)
P 		186.8
(-1.1)
P 		318
B 403.6
(3)
P 		83.9
(-3)
P 		101.5
(-2.7)
P 		306.3
(1.2)
P 		320
C 495.9
(3)
P 		107.8
(-3)
P 		148.2
(-2.4)
P 		225.1
(-1.2)
P 		388
avr 434.6
(3) 		92.8
(-3) 		119
(-2.5) 		239.4
(-0.4) 		342

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2307
1 2 3 4 5 6 range
A 1309.2
(3)
P 		942.2
(0.4)
P 		966.6
(0.6)
P 		897.3
(0.1)
P 		465.8
(-3)
P 		1109.9
(1.6)
P 		843
B 2071.1
(3)
P 		777.7
(-2.3)
P 		819.8
(-2.1)
P 		609.7
(-3)
P 		643.5
(-2.9)
P 		1132.1
(-0.9)
P 		1461
C 2773.2
(3)
P 		723.9
(-2.6)
P 		936.1
(-2.1)
P 		594.8
(-3)
P 		707.7
(-2.7)
P 		1201
(-1.3)
P 		2178
avr 2051.2
(3) 		814.6
(-2.1) 		907.5
(-1.7) 		700.6
(-2.6) 		605.7
(-3) 		1147.7
(-0.8) 		1446
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 190585_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3302
Sequence Type Exemplar sequence
Representative Public ID ZK970.7 NCBI
Target Description ZK970.7 /REP_DB=WormBase Gene ID /WP=CE02407 /TR=Q23683 /GB=CAA88891.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=OV-17 antigen precursor
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063819(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_063819 NCBI Caenorhabditis elegans ZK970.7 (ZK970.7) mRNA, complete cds. 11/11 None
SNAP00000004316 ENSEMBL cdna:SNAP chromosome:CEL140:II:10312233:10312759:1 11/11 None
GENEFINDER00000004324 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:10312233:10312759:1 11/11 None
ZK970.7 ENSEMBL cdna:known chromosome:CEL140:II:10312233:10312759:1 gene:ZK970.7 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:10312229-10312756(+) 100.0 100.0
Public Domain and Genome References
Gene Title OV-17 antigen precursor
Ensembl ZK970.7
Entrez Gene 191473 Entrez gene
SwissProt Q23683 EMBL-EBI
WormBase CE02407 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA88891 Hypothetical protein ZK970.7 [Caenorhabditis elegans] ref|NP_496220.1| ZK970.7 [Caenorhabditis elegans] 4.0E-78
blast AAA81053 Hypothetical protein C06A8.3 [Caenorhabditis elegans] ref|NP_495640.1| C06A8.3 [Caenorhabditis elegans] 9.0E-60
blast CAE67454 Hypothetical protein CBG12955 [Caenorhabditis briggsae] 9.0E-60
Sequence
Target Sequence 
>C. ELEGANS:190585_AT
gtcttgcaattcttgctcttttctccgttgcaatggtgtctgtctatggacaagacaccc
caccaccattccttcgaaatgctactcctgatcaactaaaaagcttccaacaaatgattc
aaagtaatggccacttgacggagaccgctatgggagcaaagattcaggaatgggtggatc
agcaaggaggaaaagttgcagctgattggaaagacttccaagagtttatcaaaggacaac
aaggaaagtctgaagctgctcatcaaactgccatctccagtttctcaccagaagcaaaga
aagctgacgccgagctaaccgccatttccaatgatgcatctctttctatcaaggccaagg
gagataagatccaagcttatcttaccaccc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTCTTGCAATTCTTGCTCTTTTCTC 43 469 20 Antisense
CTCTTTTCTCCGTTGCAATGGTGTC 18 229 35 Antisense
TGTCTATGGACAAGACACCCCACCA 685 557 60 Antisense
TCCTTCGAAATGCTACTCCTGATCA 706 589 89 Antisense
GTAATGGCCACTTGACGGAGACCGC 33 463 143 Antisense
CTGAAGCTGCTCATCAAACTGCCAT 112 239 269 Antisense
ATCTCCAGTTTCTCACCAGAAGCAA 691 31 292 Antisense
AAGAAAGCTGACGCCGAGCTAACCG 294 151 316 Antisense
AGCTAACCGCCATTTCCAATGATGC 309 79 332 Antisense
GCATCTCTTTCTATCAAGGCCAAGG 171 309 355 Antisense
AAGATCCAAGCTTATCTTACCACCC 616 155 385 Antisense
Sequence Source Affymetrix Proprietary Database