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[190583_at] tetraspanin

Description F53B6.1 /REP_DB=WormBase Gene ID /WP=CE26464 /GEN=tsp-15 /TR=Q9XVM9 /GB=CAB03120.2 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=tetraspanin
Cluster 6grp_highest_10_10 > 08      6grp_high1_10_10 > 70      4grp_highest_8_8 > 41      4grp_high_8_8 > 49      6grp_highest_nonorm > 65      6grp_total > 91      4grp_total > 54      6grp_cgc > 96      6grp_high1_sub > 04      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 776
1 2 3 4 range
A 1135.5
(3)
P 		743.2
(-0.2)
P 		710.6
(-0.5)
P 		400.8
(-3)
P 		735
B 1106.7
(3)
P 		777.3
(-0.1)
P 		779
(-0.1)
P 		471
(-3)
P 		636
C 1176.5
(3)
P 		848.2
(0.3)
P 		789.7
(-0.2)
P 		448.3
(-3)
P 		728
avr 1139.6
(3) 		789.6
(-0) 		759.8
(-0.3) 		440
(-3) 		700

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 942
1 2 3 4 5 6 range
A 1046.5
(0.3)
P 		917.7
(-0.8)
P 		835.1
(-1.4)
P 		1179.6
(1.4)
P 		1374.4
(3)
P 		645.8
(-3)
P 		729
B 1070.6
(0.3)
P 		1246.1
(1.9)
P 		1020.2
(-0.1)
P 		1366.9
(3)
P 		1210.6
(1.6)
P 		697.1
(-3)
P 		670
C 822.5
(-2.4)
P 		1184.7
(0.1)
P 		741.1
(-3)
P 		1587.6
(3)
P 		909.5
(-1.8)
P 		763
(-2.8)
P 		847
avr 979.9
(-0.5) 		1116.2
(0.7) 		865.5
(-1.5) 		1378
(3) 		1164.8
(1.1) 		702
(-3) 		676
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 355
1 2 3 4 range
A 413.4
(3)
P 		161.3
(-1.3)
P 		185.8
(-0.9)
P 		58.7
(-3)
P 		355
B 352.9
(3)
P 		192
(-0.8)
P 		180.5
(-1.1)
P 		100.4
(-3)
P 		253
C 389.4
(3)
P 		243.9
(0.2)
P 		275.2
(0.8)
P 		75.6
(-3)
P 		314
avr 385.2
(3) 		199.1
(-0.6) 		213.8
(-0.3) 		78.2
(-3) 		307

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 335
1 2 3 4 5 6 range
A 192.9
(-2.2)
P 		326.4
(0.9)
P 		181.9
(-2.4)
P 		299.2
(0.3)
P 		414.7
(3)
P 		157.2
(-3)
P 		258
B 372.5
(0.1)
P 		414.8
(1.1)
P 		247.7
(-3)
P 		362
(-0.2)
P 		491.9
(3)
P 		259.9
(-2.7)
P 		244
C 304.8
(1)
P 		361.5
(3)
P 		188.6
(-3)
P 		319.3
(1.5)
P 		294.3
(0.7)
P 		255.4
(-0.7)
P 		173
avr 290.1
(-0.4) 		367.6
(2) 		206.1
(-3) 		326.8
(0.7) 		400.3
(3) 		224.2
(-2.4) 		194
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 190583_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1147
Sequence Type Exemplar sequence
Representative Public ID F53B6.1 NCBI
Target Description F53B6.1 /REP_DB=WormBase Gene ID /WP=CE26464 /GEN=tsp-15 /TR=Q9XVM9 /GB=CAB03120.2 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=tetraspanin
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060003(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060003 NCBI Caenorhabditis elegans F53B6.1 (tetraspanin) mRNA, complete cds. 11/11 None
SNAP00000012063 ENSEMBL cdna:SNAP chromosome:CEL140:I:8936880:8938871:1 11/11 None
GENEFINDER00000012080 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:8936880:8938871:1 11/11 None
F53B6.1 ENSEMBL cdna:known chromosome:CEL140:I:8936880:8939177:1 gene:F53B6.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:8936810-8938802(+) 100.0 100.0
Public Domain and Genome References
Gene Title tetraspanin
Gene Symbol tsp-15
Ensembl F53B6.1
Entrez Gene 192065 Entrez gene
SwissProt Q9XVM9 EMBL-EBI
WormBase CE26464 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
16021 integral to membrane inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB03120 Hypothetical protein F53B6.1 [Caenorhabditis elegans] ref|NP_492404.1| F53B6.1 [Caenorhabditis elegans] 1.0E-133
blast CAE66995 Hypothetical protein CBG12393 [Caenorhabditis briggsae] 1.0E-124
blast AAH12236 Cd151 protein [Mus musculus] 2.0E-11
Protein Domains
Database ID Description E-Value
Pfam IPR000301 EMBL-EBI CD9/CD37/CD63 antigen 1.1E-54
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_492404.1 4 21-43,63-82,89-111,230-252
F53B6.1 4 21-43,63-82,89-111,230-252
SNAP00000012063 4 21-43,63-82,89-111,230-252
GENEFINDER00000012080 4 21-43,63-82,89-111,230-252
Sequence
Target Sequence 
>C. ELEGANS:190583_AT
ctcgtttcaccgtcactttatgtggatgttggacgaattcttgtaattatcagtatcctc
tcaatactcaattatttgatatgcttttatgcaattttcaaggaaatgaggtgttttgtc
acatcgtgcgcagttgcgtccattgttattgctgtcatgcttattattggcggctgtatt
ggactcaacttccgtgatcaattgactcattatactccactcaacctgaaaatgcttact
tcattgagagaactgtatggaacacatgatatgaaaggaattaccgagtcttgggatgct
cttcagtcaaattttaaatgttgtggtgttaatggaacagataatgctcaaatttggaaa
acttcaaaatggtacatgcatcaaagggctccaaaattgctcattccagagtcctgttgt
atcccatcggaaatcgaaagatgccgttcaaatccatttgatcaggatgcacctcctcca
tactatacaagtacatgttacgaaccccttcaaaatgatcttttacacgttatgaacgtt
gcttcatggctttgtataaccaatgccattgtacagattatcccgtc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CTCGTTTCACCGTCACTTTATGTGG 616 231 163 Antisense
TGAGGTGTTTTGTCACATCGTGCGC 640 567 269 Antisense
GTTGCGTCCATTGTTATTGCTGTCA 683 439 295 Antisense
GGCTGTATTGGACTCAACTTCCGTG 442 539 334 Antisense
CTCATTATACTCCACTCAACCTGAA 139 229 368 Antisense
CCGAGTCTTGGGATGCTCTTCAGTC 126 263 446 Antisense
AATTGCTCATTCCAGAGTCCTGTTG 270 179 557 Antisense
AGTCCTGTTGTATCCCATCGGAAAT 218 59 572 Antisense
CAAGTACATGTTACGAACCCCTTCA 644 181 650 Antisense
GAACGTTGCTTCATGGCTTTGTATA 364 347 696 Antisense
ATGCCATTGTACAGATTATCCCGTC 611 39 725 Antisense
Sequence Source Affymetrix Proprietary Database