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[190582_at] heat shock 47k protein

Description C28G1.2 /REP_DB=WormBase Gene ID /WP=CE04119 /TR=Q18287 /GB=AAA82351.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation /DEF=heat shock 47k protein
Cluster 6grp_total > 04      4grp_total > 13      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 83
1 2 3 4 range
A 35.9
(-1.8)
P 		27.6
(-2.4)
A 		18.7
(-3)
A 		101.3
(3)
P 		83
B 52.1
(1.1)
P 		22.6
(-3)
A 		22.5
(-3)
A 		66.2
(3)
P 		44
C 60.5
(2.8)
P 		51.4
(1)
P 		30.9
(-3)
M 		61.7
(3)
A 		31
avr 49.5
(-0.1) 		33.9
(-1.9) 		24
(-3) 		76.4
(3) 		52

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 79
1 2 3 4 5 6 range
A 59.7
(3)
P 		24.2
(-1)
A 		41.2
(0.9)
P 		21.8
(-1.2)
A 		56.5
(2.6)
A 		6.1
(-3)
A 		54
B 81
(3)
P 		58.8
(1.1)
P 		9.4
(-3)
A 		58
(1.1)
P 		46.3
(0.1)
A 		27.9
(-1.4)
A 		72
C 62.2
(0.9)
P 		85.2
(3)
P 		19.8
(-3)
A 		37.6
(-1.4)
A 		34.5
(-1.7)
M 		24.6
(-2.6)
A 		65
avr 67.6
(3) 		56.1
(1.6) 		23.5
(-2.5) 		39.1
(-0.6) 		45.8
(0.3) 		19.5
(-3) 		48
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 15
1 2 3 4 range
A 13.1
(2)
P 		6
(-2.3)
A 		4.9
(-3)
A 		14.8
(3)
P 		10
B 16.6
(3)
P 		5.6
(-2.8)
A 		5.2
(-3)
A 		14.1
(1.7)
P 		11
C 20
(3)
P 		14.8
(-0.3)
P 		10.8
(-2.8)
M 		10.4
(-3)
A 		10
avr 16.6
(3) 		8.8
(-1.9) 		7
(-3) 		13.1
(0.8) 		10

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 27
1 2 3 4 5 6 range
A 11
(0.7)
P 		8.6
(-0.3)
A 		9
(-0.1)
P 		5.5
(-1.5)
A 		17.1
(3)
A 		1.5
(-3)
A 		16
B 28.2
(3)
P 		19.6
(1)
P 		2.3
(-3)
A 		15.4
(0)
P 		18.8
(0.8)
A 		10.4
(-1.1)
A 		26
C 23
(2.1)
P 		26
(3)
P 		5
(-3)
A 		7.6
(-2.3)
A 		11.2
(-1.2)
M 		8.2
(-2.1)
A 		21
avr 20.7
(3) 		18.1
(2) 		5.4
(-3) 		9.5
(-1.4) 		15.7
(1) 		6.7
(-2.5) 		15
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 190582_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16912
Sequence Type Exemplar sequence
Representative Public ID C28G1.2 NCBI
Target Description C28G1.2 /REP_DB=WormBase Gene ID /WP=CE04119 /TR=Q18287 /GB=AAA82351.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation /DEF=heat shock 47k protein
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077096(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077096 NCBI Caenorhabditis elegans C28G1.2 (C28G1.2) mRNA, complete cds. 11/11 None
GENEFINDER00000026790 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:8835901:8837433:1 9/11 None
SNAP00000026784 ENSEMBL cdna:SNAP chromosome:CEL140:X:8836581:8837598:1 9/11 None
C28G1.2 ENSEMBL cdna:known chromosome:CEL140:X:8836581:8837598:1 gene:C28G1.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:8835899-8837597(+) 100.0 100.0
Public Domain and Genome References
Gene Title heat shock 47k protein
Ensembl C28G1.2
Entrez Gene 182990 Entrez gene
SwissProt Q18287 EMBL-EBI
WormBase CE33520 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
4867 serine-type endopeptidase inhibitor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAA82351 Hypothetical protein C28G1.2 [Caenorhabditis elegans] ref|NP_509497.2| C28G1.2 [Caenorhabditis elegans] 1.0E-149
blast AAA82351 Hypothetical protein C28G1.2 [Caenorhabditis elegans] ref|NP_509497.2| C28G1.2 [Caenorhabditis elegans] 1.0E-128
blast AAA82351 Hypothetical protein C28G1.2 [Caenorhabditis elegans] ref|NP_509497.2| C28G1.2 [Caenorhabditis elegans] 1.0E-111
blast CAE69370 Hypothetical protein CBG15466 [Caenorhabditis briggsae] 1.0E-82
blast CAE69370 Hypothetical protein CBG15466 [Caenorhabditis briggsae] 2.0E-68
blast CAE69370 Hypothetical protein CBG15466 [Caenorhabditis briggsae] 1.0E-62
Sequence
Target Sequence 
>C. ELEGANS:190582_AT
ggggtttctggactctgaggttagaagctacttgaaaaatgatttaactgacatttctgt
cagagctgatagcggcataaacgatgttagaagaaattctccaaatcagactagaatttt
atttaatgctggatgggaagagaagctgcatgaaaagcgctcatggcttttttatccttc
aaagtacaacagcaaagtgattacatacttgataaaagagaaacatgttctgctcaatgt
tgacgacgcttttcaaatgatatcaatcatgtatgaaaacaaaagtttgcaatttgtggt
cctagttccttcaaaaccatgcgggttgaaaaaagccttaaagaagctcacgaaacaacg
ttttgaaaaacttttccaagagtcaacggttcaattagtgcagatcatgatacctaaact
tgatgttctccaacttctcatcaactccaaagttctcggattgcagccgccgattaaaac
aagtttaaaatacaaggagtcaccgagaatttcaaaaatgttgtatcgtcctgaaaaccg
tttaccttaccattttcgtgcagatcatccttttgtatttgccgt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGGGTTTCTGGACTCTGAGGTTAGA 474 497 288 Antisense
CGCTCATGGCTTTTTTATCCTTCAA 361 255 445 Antisense
TGCTCAATGTTGACGACGCTTTTCA 447 579 518 Antisense
GCAATTTGTGGTCCTAGTTCCTTCA 375 321 576 Antisense
TAGTTCCTTCAAAACCATGCGGGTT 254 647 590 Antisense
AAACTTGATGTTCTCCAACTTCTCA 260 127 703 Antisense
TCCAACTTCTCATCAACTCCAAAGT 677 587 716 Antisense
ACTCCAAAGTTCTCGGATTGCAGCC 66 91 731 Antisense
GGATTGCAGCCGCCGATTAAAACAA 53 509 745 Antisense
TTACCTTACCATTTTCGTGCAGATC 442 681 829 Antisense
CAGATCATCCTTTTGTATTTGCCGT 698 205 848 Antisense
Sequence Source Affymetrix Proprietary Database