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[190581_at] cuticulin

Description C47G2.1 /REP_DB=WormBase Gene ID /WP=CE02165 /GEN=cut-1 /TR=SW:Q03755 /GB=CAA88934.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=cuticulin
Cluster 6grp_total > 83      4grp_total > 42      6grp_cgc > 87      6grp_cgc_sub > 05      6grp_total_sub > Hat      6grp_rule_based > S5      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 29
1 2 3 4 range
A 9.3
(-3)
A 		30.6
(3)
A 		21.7
(0.5)
A 		28.8
(2.5)
A 		21
B 11.5
(-3)
A 		26.1
(3)
A 		22.3
(1.4)
A 		11.7
(-2.9)
A 		15
C 20.7
(-3)
A 		38.1
(3)
A 		32.6
(1.1)
A 		20.9
(-2.9)
A 		17
avr 13.8
(-3) 		31.6
(3) 		25.5
(0.9) 		20.5
(-0.7) 		18

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 12133
1 2 3 4 5 6 range
A 11.6
(-3)
A 		14.4
(-3)
A 		30.1
(-3)
A 		9126.1
(1.5)
P 		12044.5
(3)
P 		2192.4
(-1.9)
P 		12033
B 19.9
(-3)
A 		22.5
(-3)
A 		71.9
(-3)
A 		10797.3
(2.9)
P 		11023.3
(3)
P 		1882.1
(-2)
P 		11003
C 16.6
(-3)
A 		17.6
(-3)
A 		47.1
(-3)
A 		10770.6
(2.3)
P 		12144.3
(3)
P 		1557.6
(-2.2)
P 		12128
avr 16
(-3) 		18.2
(-3) 		49.7
(-3) 		10231.3
(2.2) 		11737.4
(3) 		1877.4
(-2) 		11721
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 9
1 2 3 4 range
A 3.4
(-3)
A 		6.6
(3)
A 		5.7
(1.3)
A 		4.2
(-1.5)
A 		3
B 3.7
(-1.2)
A 		6.5
(3)
A 		5.2
(1.1)
A 		2.5
(-3)
A 		4
C 6.8
(-0.5)
A 		11
(2.7)
A 		11.4
(3)
A 		3.5
(-3)
A 		8
avr 4.6
(-1.4) 		8
(3) 		7.4
(2.2) 		3.4
(-3) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 4477
1 2 3 4 5 6 range
A 2.1
(-3)
A 		5.1
(-3)
A 		6.5
(-3)
A 		2314.6
(0.8)
P 		3634.5
(3)
P 		533.8
(-2.1)
P 		3632
B 6.9
(-3)
A 		7.5
(-3)
A 		17.5
(-3)
A 		2859.8
(0.8)
P 		4478.6
(3)
P 		701.8
(-2.1)
P 		4472
C 6.1
(-3)
A 		5.4
(-3)
A 		12
(-3)
A 		2166
(0.3)
P 		3929.7
(3)
P 		521.4
(-2.2)
P 		3924
avr 5
(-3) 		6
(-3) 		12
(-3) 		2446.8
(0.7) 		4014.3
(3) 		585.7
(-2.1) 		4009
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 190581_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2633
Sequence Type Exemplar sequence
Representative Public ID C47G2.1 NCBI
Target Description C47G2.1 /REP_DB=WormBase Gene ID /WP=CE02165 /GEN=cut-1 /TR=SW:Q03755 /GB=CAA88934.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=cuticulin
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064009(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064009 NCBI Caenorhabditis elegans C47G2.1 (cuticulin) mRNA, complete cds. 11/11 None
SNAP00000012593 ENSEMBL cdna:SNAP chromosome:CEL140:II:11269030:11271346:1 11/11 None
GENEFINDER00000012603 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:11269030:11271346:1 11/11 None
C47G2.1 ENSEMBL cdna:known chromosome:CEL140:II:11269030:11271505:1 gene:C47G2.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:11269026-11271343(+) 94.59 100.0
Public Domain and Genome References
Gene Title cuticulin
Gene Symbol cut-1
Ensembl C47G2.1
Entrez Gene 174720 Entrez gene
SwissProt Q03755 EMBL-EBI
WormBase CE02165 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA88934 Hypothetical protein C47G2.1 [Caenorhabditis elegans] ref|NP_496410.1| C47G2.1 [Caenorhabditis elegans] sp|Q03755|CUT1_CAEEL Cuticlin-1 precursor 0.0
blast CAE59542 Hypothetical protein CBG02937 [Caenorhabditis briggsae] 0.0
blast AAB66646 CUT-1-like cuticlin protein precursor [Ascaris lumbricoides] 1.0E-144
Protein Domains
Database ID Description E-Value
Pfam IPR001507 EMBL-EBI Endoglin/CD105 antigen 7.0E-38
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_496410.1 1 395-417
C47G2.1 1 395-417
SNAP00000012593 1 395-417
GENEFINDER00000012603 1 395-417
Sequence
Target Sequence 
>C. ELEGANS:190581_AT
gtacccaactgacttgatggctggccaagaagctcacgtctacaaatatgccgatcgctc
ccaactcttctatcaatgccaaatctccatcaccatcaaggacccaggaagcgaatgtgc
ccgtccaacttgctcagagccacaaggattcggagccgtcaaacaagctggtgccggagg
agctcatgccgccgctgctccacaagctggagttgaagaagttcaagctgctccagtcgc
cgctgccgctccagttgctgctccagtggcagctgctgcagcagctccagccgttccacg
tgccacacttgctcagttgagattgctcagaaagaagagatctttcggagagaacgaagg
aattcttgatgttcgtgttgagatcaacactttggatatcatggagggagcctccccatc
tgctccagaagccgccgctctcgtctccgaggaatccgtccgtcgcagagccaccagcac
aggaatctgcctcaccccaatcggattcgcttctttcctcggtatcggaacaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTACCCAACTGACTTGATGGCTGGC 195 459 690 Antisense
GATGGCTGGCCAAGAAGCTCACGTC 557 405 705 Antisense
GTCTACAAATATGCCGATCGCTCCC 205 469 727 Antisense
TATCAATGCCAAATCTCCATCACCA 694 659 760 Antisense
GACCCAGGAAGCGAATGTGCCCGTC 410 381 790 Antisense
CGTCCAACTTGCTCAGAGCCACAAG 262 245 811 Antisense
GAGCCGTCAAACAAGCTGGTGCCGG 646 385 842 Antisense
TGCTGCTCCAGTGGCAGCTGCTGCA 145 583 945 Antisense
TATCATGGAGGGAGCCTCCCCATCT 64 659 1086 Antisense
GCAGAGCCACCAGCACAGGAATCTG 431 313 1154 Antisense
GCTTCTTTCCTCGGTATCGGAACAA 451 305 1198 Antisense
Sequence Source Affymetrix Proprietary Database