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[190580_at] SER/THR-protein kinase

Description T09B4.6 /REP_DB=WormBase Gene ID /WP=CE13467 /TR=O02156 /GB=AAB53008.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation /DEF=SER-THR-protein kinase
Cluster 6grp_highest_10_10 > 46      6grp_high1_10_10 > 64      6grp_highest_nonorm > 90      6grp_total > 53      4grp_total > 04      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 140
1 2 3 4 range
A 54.8
(-1.9)
P 		32.8
(-2.9)
A 		31.2
(-3)
A 		155.6
(3)
P 		124
B 31.2
(-1.6)
A 		15.7
(-3)
A 		53.7
(0.5)
P 		80.4
(3)
P 		65
C 59.3
(-1)
P 		41.3
(-2.5)
A 		35.4
(-3)
P 		108.5
(3)
P 		73
avr 48.4
(-1.7) 		29.9
(-3) 		40.1
(-2.3) 		114.8
(3) 		85

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 129
1 2 3 4 5 6 range
A 94.4
(-0.8)
P 		75.4
(-2.7)
P 		133.6
(3)
P 		72.3
(-3)
P 		130.9
(2.7)
P 		94.2
(-0.9)
P 		61
B 86.7
(-1.8)
P 		107.5
(-0.8)
P 		188.9
(3)
P 		60.3
(-3)
P 		112.7
(-0.6)
P 		108
(-0.8)
P 		129
C 73.3
(-2.4)
P 		79.1
(-1.4)
P 		69.7
(-3)
P 		100.5
(2.2)
P 		79.5
(-1.4)
P 		105.5
(3)
P 		36
avr 84.8
(-2.2) 		87.3
(-1.9) 		130.7
(3) 		77.7
(-3) 		107.7
(0.4) 		102.6
(-0.2) 		53
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 19
1 2 3 4 range
A 20
(1.9)
P 		7.1
(-3)
A 		8.2
(-2.6)
A 		22.8
(3)
P 		16
B 10
(-0.2)
A 		3.9
(-3)
A 		12.4
(0.9)
P 		17.1
(3)
P 		13
C 19.6
(3)
P 		11.9
(-3)
A 		12.4
(-2.6)
P 		18.3
(2)
P 		8
avr 16.5
(1.5) 		7.6
(-3) 		11
(-1.3) 		19.4
(3) 		12

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 30
1 2 3 4 5 6 range
A 17.4
(-3)
P 		26.8
(-0.4)
P 		29.1
(0.2)
P 		18.3
(-2.8)
P 		39.5
(3)
P 		22.9
(-1.5)
P 		22
B 30.2
(-0.2)
P 		35.8
(1)
P 		45.9
(3)
P 		16
(-3)
P 		45.8
(3)
P 		40.3
(1.9)
P 		30
C 27.2
(0.2)
P 		24.1
(-0.8)
P 		17.7
(-3)
P 		20.2
(-2.1)
P 		25.7
(-0.3)
P 		35.3
(3)
P 		18
avr 24.9
(-0.9) 		28.9
(0.4) 		30.9
(1.1) 		18.2
(-3) 		37
(3) 		32.8
(1.7) 		19
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 190580_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2100
Sequence Type Exemplar sequence
Representative Public ID T09B4.6 NCBI
Target Description T09B4.6 /REP_DB=WormBase Gene ID /WP=CE13467 /TR=O02156 /GB=AAB53008.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation /DEF=SER-THR-protein kinase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059374(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059374 NCBI Caenorhabditis elegans T09B4.6 (T09B4.6) mRNA, complete cds. 11/11 None
SNAP00000036035 ENSEMBL cdna:SNAP chromosome:CEL140:I:6166251:6167257:-1 10/11 None
T09B4.6 ENSEMBL cdna:known chromosome:CEL140:I:6165555:6167257:-1 gene:T09B4.6 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000036050 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:6165483-6167186(-) 100.0 100.0
Public Domain and Genome References
Gene Title SER/THR-protein kinase
Ensembl T09B4.6
Entrez Gene 188317 Entrez gene
SwissProt O02156 EMBL-EBI
WormBase CE13467 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB53008 Hypothetical protein T09B4.6 [Caenorhabditis elegans] ref|NP_491775.1| T09B4.6 [Caenorhabditis elegans] 1.0E-105
blast AAB53008 Hypothetical protein T09B4.6 [Caenorhabditis elegans] ref|NP_491775.1| T09B4.6 [Caenorhabditis elegans] 5.0E-80
blast CAE67405 Hypothetical protein CBG12891 [Caenorhabditis briggsae] 1.0E-20
blast CAE67405 Hypothetical protein CBG12891 [Caenorhabditis briggsae] 4.0E-20
blast CAE67406 Hypothetical protein CBG12892 [Caenorhabditis briggsae] 6.0E-13
blast CAE67406 Hypothetical protein CBG12892 [Caenorhabditis briggsae] 2.0E-12
Sequence
Target Sequence 
>C. ELEGANS:190580_AT
gaagctgttcaatttctttcaactttcatgtttggccgtattccacgcagtcgtgtcaaa
tcgttctgtggtcacttgtcaagcctgctgagcgaggcaatcgacgctaaacgatgtgtt
gatcggtacgatttgatagttttcgccgatgggagatcagatgacactattgttcaggca
gcccgtcgtgcatatgttcatcttggagagcttcaagaatgcatgaacaatggtcttatt
atggagattatgaatgggcgtgttcgtgctctgactccattttcatctcaagtggttttc
ccaaagacgatggcttcaattggagagtatgagaaggtgaaatggattttgaattttcaa
ttggaatatgatttcaaaaaagtatatgaaaaatgtttaattgctttatttttgatagga
tttataacttgtgaatttattaaatcgtcatcaaaaactcattctcaactcatatcgc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAAGCTGTTCAATTTCTTTCAACTT 151 343 31 Antisense
TTCATGTTTGGCCGTATTCCACGCA 43 689 55 Antisense
GTCGTGTCAAATCGTTCTGTGGTCA 336 473 80 Antisense
TGTGGTCACTTGTCAAGCCTGCTGA 336 555 97 Antisense
GCCTGCTGAGCGAGGCAATCGACGC 702 281 113 Antisense
GATTTGATAGTTTTCGCCGATGGGA 281 427 160 Antisense
GATGACACTATTGTTCAGGCAGCCC 11 413 190 Antisense
CCCGTCGTGCATATGTTCATCTTGG 148 261 212 Antisense
TTATGAATGGGCGTGTTCGTGCTCT 212 681 278 Antisense
CTCTGACTCCATTTTCATCTCAAGT 472 231 299 Antisense
AAAACTCATTCTCAACTCATATCGC 505 129 484 Antisense
Sequence Source Affymetrix Proprietary Database