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[190579_at] UDP-glucosyltransferase

Description C17G1.3 /REP_DB=WormBase Gene ID /WP=CE08282 /TR=Q93242 /GB=CAB01674.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation /DEF=UDP-glucosyltransferase
Cluster 6grp_highest_10_10 > 69      6grp_high1_10_10 > 95      4grp_highest_8_8 > 14      4grp_high_8_8 > 22      6grp_highest_nonorm > 69      6grp_total > 86      4grp_total > 09      6grp_highest_sub > In      6grp_cgc > 67      6grp_high1_sub > In      6grp_cgc_sub > In      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 3351
1 2 3 4 range
A 1252.7
(-3)
P 		2017.1
(-1.6)
P 		1987.4
(-1.6)
P 		4491.8
(3)
P 		3239
B 1240.3
(-3)
P 		1631.5
(-2.3)
P 		2068.4
(-1.5)
P 		4591.6
(3)
P 		3351
C 1278.2
(-3)
P 		1652.6
(-2.2)
P 		2246.9
(-1)
P 		4240.7
(3)
P 		2963
avr 1257.1
(-3) 		1767.1
(-2) 		2100.9
(-1.4) 		4441.4
(3) 		3184

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2531
1 2 3 4 5 6 range
A 1401.1
(-3)
P 		1779.3
(-2)
P 		2001
(-1.4)
P 		2396
(-0.4)
P 		2337.4
(-0.5)
P 		3689.3
(3)
P 		2288
B 1157.9
(-3)
P 		1717.9
(-1.3)
P 		1958.5
(-0.6)
P 		2353.2
(0.6)
P 		2837.4
(2.1)
P 		3150.2
(3)
P 		1992
C 1213.3
(-3)
P 		1561.6
(-1.9)
P 		2081.4
(-0.4)
P 		2704.2
(1.5)
P 		2835.3
(1.9)
P 		3203.2
(3)
P 		1990
avr 1257.4
(-3) 		1686.3
(-1.8) 		2013.6
(-0.8) 		2484.5
(0.5) 		2670
(1.1) 		3347.6
(3) 		2090
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 583
1 2 3 4 range
A 456.1
(-2.5)
P 		437.9
(-3)
P 		519.5
(-0.8)
P 		657.5
(3)
P 		220
B 395.5
(-3)
P 		402.9
(-2.9)
P 		479.3
(-2.1)
P 		978.5
(3)
P 		583
C 423.1
(-3)
P 		475.1
(-2.1)
P 		783.1
(3)
P 		715.1
(1.9)
P 		360
avr 424.9
(-3) 		438.6
(-2.8) 		594
(-0.2) 		783.7
(3) 		359

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 916
1 2 3 4 5 6 range
A 258.3
(-3)
P 		632.8
(0.5)
P 		435.8
(-1.3)
P 		607.7
(0.3)
P 		705.3
(1.2)
P 		898.2
(3)
P 		640
B 402.9
(-3)
P 		571.8
(-1.7)
P 		475.6
(-2.4)
P 		623.3
(-1.3)
P 		1152.8
(2.8)
P 		1174.7
(3)
P 		772
C 449.7
(-3)
P 		476.5
(-2.7)
P 		529.8
(-2.2)
P 		543.8
(-2.1)
P 		917.5
(1.5)
P 		1072.3
(3)
P 		623
avr 370.3
(-3) 		560.4
(-1.3) 		480.4
(-2) 		591.6
(-1) 		925.2
(1.9) 		1048.4
(3) 		678
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 190579_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16444
Sequence Type Exemplar sequence
Representative Public ID C17G1.3 NCBI
Target Description C17G1.3 /REP_DB=WormBase Gene ID /WP=CE08282 /TR=Q93242 /GB=CAB01674.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation /DEF=UDP-glucosyltransferase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077265(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077265 NCBI Caenorhabditis elegans C17G1.3 (UDP-glucosyltransferase) mRNA, complete cds. 11/11 None
SNAP00000020418 ENSEMBL cdna:SNAP chromosome:CEL140:X:9922873:9925024:-1 11/11 None
GENEFINDER00000020431 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:9922873:9925024:-1 11/11 None
C17G1.3 ENSEMBL cdna:known chromosome:CEL140:X:9922843:9925043:-1 gene:C17G1.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:9922872-9925018(-) 100.0 100.0
Public Domain and Genome References
Gene Title UDP-glucosyltransferase
Gene Symbol ugt-23
Ensembl C17G1.3
Entrez Gene 181205 Entrez gene
SwissProt Q93242 EMBL-EBI
WormBase CE08282 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
8152 metabolism inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
16758 transferase activity, transferring hexosyl groups inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB01674 Hypothetical protein C17G1.3 [Caenorhabditis elegans] ref|NP_509666.1| C17G1.3 [Caenorhabditis elegans] 0.0
blast CAE58766 Hypothetical protein CBG01959 [Caenorhabditis briggsae] 0.0
blast CAB62783 Hypothetical protein C08F11.8 [Caenorhabditis elegans] ref|NP_502633.1| C08F11.8 [Caenorhabditis elegans] 1.0E-167
Protein Domains
Database ID Description E-Value
Pfam IPR002213 EMBL-EBI UDP-glucoronosyl/UDP-glucosyl transferase 1.1E-40
Pfam IPR002213 EMBL-EBI UDP-glucoronosyl/UDP-glucosyl transferase 1.1E-40
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_509666.1 1 496-518
C17G1.3 1 496-518
SNAP00000020418 1 498-520
GENEFINDER00000020431 1 498-520
Sequence
Target Sequence 
>C. ELEGANS:190579_AT
gttattccagctcatgcctgatgtaacttttatctggaaatacgagaatcttgccgacaa
aaaatacacatgcggaataatgaatatcaatcgtgttgaatggattccacaaaccgagct
tttagcggattcccgtgttgatgcgtttatcactcacggtggtcttggaagtgttaccga
actggctacaatgggaaaacctgctgtggtgatcccaatattcgctgatcaaacgagaaa
tgctgaaatgctaaagcgtcacggaggagccgaagttcttcacaaaacggaccttgccaa
cccagaaacgcttcgaaaaactttgagaaaagtgatggatgatccaagttatcgtcaaaa
tgctcagagactcgctgaaatgctaaataaccaacctactaacccgaaagaaactttggt
aaagcacgtggaatttgctgcaaggtttggaaaacttccgtctatggatccatatggtag
acaccaaaacattattgagtactacaatcttgacattctagccattgccacaattcttct
aaccttag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTTATTCCAGCTCATGCCTGATGTA 341 447 981 Antisense
GAATGGATTCCACAAACCGAGCTTT 487 331 1078 Antisense
ACCGAGCTTTTAGCGGATTCCCGTG 555 87 1093 Antisense
GGATTCCCGTGTTGATGCGTTTATC 100 509 1107 Antisense
TGCGTTTATCACTCACGGTGGTCTT 47 585 1122 Antisense
GGAAGTGTTACCGAACTGGCTACAA 558 531 1147 Antisense
GAAAACCTGCTGTGGTGATCCCAAT 359 351 1175 Antisense
TTGCCAACCCAGAAACGCTTCGAAA 628 699 1274 Antisense
GGAAAACTTCCGTCTATGGATCCAT 171 529 1429 Antisense
TCTTGACATTCTAGCCATTGCCACA 387 617 1488 Antisense
ATTGCCACAATTCTTCTAACCTTAG 172 7 1504 Antisense
Sequence Source Affymetrix Proprietary Database