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[190578_at] trithorax like protein

Description F02D10.7 /REP_DB=WormBase Gene ID /WP=CE03142 /TR=Q19117 /GB=CAA91938.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation /DEF=trithorax like protein
Cluster 6grp_total > 80      4grp_total > 10      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 35
1 2 3 4 range
A 1.6
(-3)
A 		15.1
(0.3)
A 		5.2
(-2.1)
A 		26.1
(3)
A 		25
B 4.2
(-1.2)
A 		5.6
(2.1)
A 		3.4
(-3)
A 		6
(3)
A 		3
C 8.7
(-2)
A 		3.2
(-3)
A 		3.2
(-3)
A 		36.4
(3)
A 		33
avr 4.8
(-2.7) 		8
(-1.7) 		3.9
(-3) 		22.8
(3) 		19

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 29
1 2 3 4 5 6 range
A 1.8
(-3)
A 		2.3
(-2.5)
A 		2.6
(-2.1)
A 		2.3
(-2.5)
A 		7.4
(3)
A 		3.7
(-1)
A 		6
B 1.9
(-3)
A 		4.5
(-2.5)
A 		4.3
(-2.5)
A 		30.3
(3)
A 		4.3
(-2.5)
A 		3.4
(-2.7)
A 		28
C 3.3
(-2.8)
A 		27
(3)
A 		2.5
(-3)
A 		2.9
(-2.9)
A 		4.8
(-2.4)
A 		3.2
(-2.8)
A 		25
avr 2.3
(-3) 		11.3
(2.7) 		3.1
(-2.5) 		11.8
(3) 		5.5
(-1) 		3.4
(-2.3) 		10
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 6
1 2 3 4 range
A 0.6
(-3)
A 		3.3
(2.1)
A 		1.4
(-1.5)
A 		3.8
(3)
A 		3
B 1.3
(2)
A 		1.4
(3)
A 		0.8
(-3)
A 		1.3
(2)
A 		1
C 2.9
(-0.7)
A 		0.9
(-3)
A 		1.1
(-2.8)
A 		6.1
(3)
A 		5
avr 1.6
(-1.8) 		1.9
(-1.2) 		1.1
(-3) 		3.7
(3) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 8
1 2 3 4 5 6 range
A 0.3
(-3)
A 		0.8
(-1.4)
A 		0.6
(-2.1)
A 		0.6
(-2.1)
A 		2.2
(3)
A 		0.9
(-1.1)
A 		2
B 0.7
(-3)
A 		1.5
(-2.3)
A 		1
(-2.8)
A 		8
(3)
A 		1.7
(-2.2)
A 		1.3
(-2.5)
A 		7
C 1.2
(-2.5)
A 		8.2
(3)
A 		0.6
(-3)
A 		0.6
(-3)
A 		1.6
(-2.2)
A 		1.1
(-2.6)
A 		8
avr 0.7
(-3) 		3.5
(3) 		0.7
(-3) 		3.1
(2.1) 		1.8
(-0.6) 		1.1
(-2.1) 		3
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 190578_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18003
Sequence Type Exemplar sequence
Representative Public ID F02D10.7 NCBI
Target Description F02D10.7 /REP_DB=WormBase Gene ID /WP=CE03142 /TR=Q19117 /GB=CAA91938.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation /DEF=trithorax like protein
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077840(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077840 NCBI Caenorhabditis elegans F02D10.7 (F02D10.7) mRNA, complete cds. 11/11 None
GENEFINDER00000039150 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:13443632:13448151:1 11/11 None
SNAP00000039140 ENSEMBL cdna:SNAP chromosome:CEL140:X:13446639:13448151:1 11/11 None
F02D10.7 ENSEMBL cdna:known chromosome:CEL140:X:13446642:13448151:1 gene:F02D10.7 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:13446641-13448151(+) 100.0 100.0
Public Domain and Genome References
Gene Title trithorax like protein
Ensembl F02D10.7
Entrez Gene 184086 Entrez gene
SwissProt Q19117 EMBL-EBI
WormBase CE03142 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6355 regulation of transcription, DNA-dependent inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3677 DNA binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA91938 Hypothetical protein F02D10.7 [Caenorhabditis elegans] ref|NP_510241.1| F02D10.7 [Caenorhabditis elegans] 0.0
blast CAA16276 Hypothetical protein Y2H9A.1 [Caenorhabditis elegans] ref|NP_506333.1| Maternal Effect Sterile family member (mes-4) [Caenorhabditis elegans] gb|AAF62516.1| maternal-effect sterile 4 [Caenorhabditis elegans] sp|Q9NH52|MES4_CAEEL Probable histone methyltransferase mes-4 protein (Maternal-effect sterile 4 protein) 4.0E-17
blast T26577 hypothetical protein Y2H9A.1 - Caenorhabditis elegans 4.0E-17
blast CAA16276 Hypothetical protein Y2H9A.1 [Caenorhabditis elegans] ref|NP_506333.1| Maternal Effect Sterile family member (mes-4) [Caenorhabditis elegans] gb|AAF62516.1| maternal-effect sterile 4 [Caenorhabditis elegans] sp|Q9NH52|MES4_CAEEL Probable histone methyltransferase mes-4 protein (Maternal-effect sterile 4 protein) 4.0E-16
blast T26577 hypothetical protein Y2H9A.1 - Caenorhabditis elegans 4.0E-16
blast CAA16276 Hypothetical protein Y2H9A.1 [Caenorhabditis elegans] ref|NP_506333.1| Maternal Effect Sterile family member (mes-4) [Caenorhabditis elegans] gb|AAF62516.1| maternal-effect sterile 4 [Caenorhabditis elegans] sp|Q9NH52|MES4_CAEEL Probable histone methyltransferase mes-4 protein (Maternal-effect sterile 4 protein) 6.0E-16
blast T26577 hypothetical protein Y2H9A.1 - Caenorhabditis elegans 6.0E-16
Protein Domains
Database ID Description E-Value
Pfam IPR001214 EMBL-EBI Nuclear protein SET 9.3E-37
Pfam IPR001214 EMBL-EBI Nuclear protein SET 9.3E-37
Pfam IPR001214 EMBL-EBI Nuclear protein SET 9.3E-37
Sequence
Target Sequence 
>C. ELEGANS:190578_AT
gaaaatcgagagtcagcgtcctcctgtgagccgacccattcccaagttccagagcatttc
cattttccacagcacaatcaaggagctcctttgtcatgacgacgattttctcccaaatgt
gaaaacctgcgaagaccttcttctgaagtttgagaagaacaagggatatggtgtgtttgc
gacaaaaattttggaaaatggatgtgtgattggtcaatattgcggagaatacatttctga
aaaggaaaaagcacgaagagacgctttggcaaaagtttgcaacgacaaagaatgcaagtt
ctacagtttccaagtaaaactcgagcttctcaatgagcttcaagctcaaaaggtttatgt
ggatgggtcttcggttaaaaatatcactgcaattctcaatacgtcttgtgagcccaattg
ca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAAAATCGAGAGTCAGCGTCCTCCT 572 353 630 Antisense
CATTCCCAAGTTCCAGAGCATTTCC 448 217 666 Antisense
TTTCCATTTTCCACAGCACAATCAA 595 669 686 Antisense
TCAAGGAGCTCCTTTGTCATGACGA 216 633 707 Antisense
GTCATGACGACGATTTTCTCCCAAA 344 467 722 Antisense
GTGAAAACCTGCGAAGACCTTCTTC 77 483 748 Antisense
AATGCAAGTTCTACAGTTTCCAAGT 142 165 920 Antisense
AAACTCGAGCTTCTCAATGAGCTTC 266 127 946 Antisense
GGTTTATGTGGATGGGTCTTCGGTT 156 485 981 Antisense
ATCACTGCAATTCTCAATACGTCTT 132 29 1012 Antisense
AATACGTCTTGTGAGCCCAATTGCA 259 173 1027 Antisense
Sequence Source Affymetrix Proprietary Database