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[190574_at]

Description F45H11.1 /REP_DB=WormBase Gene ID /WP=CE16055 /TR=Q93727 /GB=CAB01709.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=Zinc finger, C2H2 type
Cluster 6grp_highest_10_10 > 98      6grp_high1_10_10 > 49      4grp_high_8_8 > 12      6grp_highest_nonorm > 90      6grp_total > 49      4grp_total > 12      6grp_highest_sub > Cu      6grp_high1_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 207
1 2 3 4 range
A 127.1
(-0.9)
P 		57.8
(-2.9)
A 		56
(-3)
A 		263
(3)
P 		207
B 107.7
(-2)
P 		112.1
(-1.8)
P 		85.9
(-3)
A 		219.9
(3)
P 		134
C 125.9
(-1)
P 		94.9
(-2)
P 		64.4
(-3)
P 		253.1
(3)
P 		189
avr 120.2
(-1.3) 		88.3
(-2.3) 		68.8
(-3) 		245.3
(3) 		177

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 114
1 2 3 4 5 6 range
A 161.1
(2.9)
P 		64.3
(-2.2)
P 		49.7
(-3)
P 		100.2
(-0.3)
P 		162.9
(3)
P 		147.9
(2.2)
P 		113
B 130.1
(0.9)
P 		81.4
(-2)
P 		65.7
(-3)
P 		112.4
(-0.1)
P 		163.9
(3)
P 		129.3
(0.9)
P 		98
C 116.2
(-0.4)
P 		104.8
(-2.2)
P 		99.6
(-3)
P 		103.6
(-2.4)
P 		108.3
(-1.7)
P 		138.3
(3)
P 		39
avr 135.8
(2.2) 		83.5
(-2) 		71.7
(-3) 		105.4
(-0.2) 		145
(3) 		138.5
(2.5) 		73
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 34
1 2 3 4 range
A 46.3
(3)
P 		12.5
(-3)
A 		14.6
(-2.6)
A 		38.5
(1.6)
P 		34
B 34.3
(0.2)
P 		27.7
(-1.3)
P 		19.9
(-3)
A 		46.9
(3)
P 		27
C 41.7
(2.7)
P 		27.3
(-1.6)
P 		22.4
(-3)
P 		42.7
(3)
P 		20
avr 40.8
(2.5) 		22.5
(-2.1) 		19
(-3) 		42.7
(3) 		24

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 56
1 2 3 4 5 6 range
A 29.7
(-0)
P 		22.9
(-1.1)
P 		10.8
(-3)
P 		25.4
(-0.7)
P 		49.2
(3)
P 		36
(0.9)
P 		38
B 45.3
(0.5)
P 		27.1
(-1.7)
P 		15.9
(-3)
P 		29.8
(-1.4)
P 		66.6
(3)
P 		48.2
(0.8)
P 		51
C 43.1
(2.2)
P 		32
(-0.4)
P 		25.4
(-1.9)
P 		20.8
(-3)
P 		35.1
(0.4)
P 		46.3
(3)
P 		26
avr 39.4
(1) 		27.3
(-1.2) 		17.4
(-3) 		25.3
(-1.6) 		50.3
(3) 		43.5
(1.8) 		33
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 190574_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.864
Sequence Type Exemplar sequence
Representative Public ID F45H11.1 NCBI
Target Description F45H11.1 /REP_DB=WormBase Gene ID /WP=CE16055 /TR=Q93727 /GB=CAB01709.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=Zinc finger, C2H2 type
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001026295(11), NM_001026294(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001026295 NCBI Caenorhabditis elegans F45H11.1b (F45H11.1) mRNA, complete cds. 11/11 None
NM_001026294 NCBI Caenorhabditis elegans F45H11.1a (F45H11.1) mRNA, complete cds. 11/11 None
GENEFINDER00000042276 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:10374743:10379649:1 11/11 None
F45H11.1 ENSEMBL cdna:known chromosome:CEL140:I:10374743:10379749:1 gene:F45H11.1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000042265 6/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:10374673-10379580(+) 100.0 100.0
Public Domain and Genome References
Ensembl F45H11.1
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB01709 Hypothetical protein F45H11.1a [Caenorhabditis elegans] ref|NP_001021465.1| F45H11.1a [Caenorhabditis elegans] 1.0E-131
blast CAI79244 Hypothetical protein F45H11.1b [Caenorhabditis elegans] ref|NP_001021466.1| F45H11.1b [Caenorhabditis elegans] 1.0E-129
blast CAB01709 Hypothetical protein F45H11.1a [Caenorhabditis elegans] ref|NP_001021465.1| F45H11.1a [Caenorhabditis elegans] 1.0E-126
blast CAI79244 Hypothetical protein F45H11.1b [Caenorhabditis elegans] ref|NP_001021466.1| F45H11.1b [Caenorhabditis elegans] 1.0E-126
blast CAE73800 Hypothetical protein CBG21350 [Caenorhabditis briggsae] 1.0E-42
Protein Domains
Database ID Description E-Value
scop a.3.1.monodomain cytochrome c All alpha proteins; Cytochrome c; Cytochrome c; monodomain cytochrome c 2.20000004768372
scop a.3.1.monodomain cytochrome c All alpha proteins; Cytochrome c; Cytochrome c; monodomain cytochrome c 1.79999995231628
Pfam IPR007087 EMBL-EBI Zn-finger, C2H2 type 3.5E-5
Sequence
Target Sequence 
>C. ELEGANS:190574_AT
gtactctccatatttagcaactcctaattggtgggttgaccaaacaggatggccacaact
gtaccctacagtaaccacagcttcatctgtagatgtttatcaaaactacttggcttctag
tcaacttggtggccttttaagttcgtcagtttctgcagtggcttctcaactgccagccgg
tattaatgcacaatcagctctcaacataacgagtcaacagagaactattgcaaagagttt
ccaacacacaaaaccaatggcttcatcttcatcaattccatcagtactaacagcttccaa
ttccagtgcaaatagtcttgtaagcagtggttctgaaagtgttagtgctcgtggaacttc
tggtagtggaggtactggtaagtatccttcatcacgaaccgccaacaagtgcgagtgccc
aaattgccacgaaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTACTCTCCATATTTAGCAACTCCT 17 459 309 Antisense
ACAGGATGGCCACAACTGTACCCTA 394 105 352 Antisense
GCTTCTAGTCAACTTGGTGGCCTTT 552 303 421 Antisense
AGTTCGTCAGTTTCTGCAGTGGCTT 177 65 448 Antisense
CTTCTCAACTGCCAGCCGGTATTAA 210 219 470 Antisense
TGCACAATCAGCTCTCAACATAACG 92 577 495 Antisense
AAAACCAATGGCTTCATCTTCATCA 579 131 558 Antisense
CAGTACTAACAGCTTCCAATTCCAG 43 201 590 Antisense
GTGCTCGTGGAACTTCTGGTAGTGG 640 477 653 Antisense
GGTAAGTATCCTTCATCACGAACCG 19 505 685 Antisense
TGCGAGTGCCCAAATTGCCACGAAA 481 583 718 Antisense
Sequence Source Affymetrix Proprietary Database