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[190572_at] dystrophin like protein

Description F21A3.4 /REP_DB=WormBase Gene ID /WP=CE09518 /TR=O17827 /GB=CAB04155.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=dystrophin like protein
Cluster 6grp_total > 89      4grp_total > 52      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 45
1 2 3 4 range
A 30.8
(1.1)
A 		6.8
(-3)
A 		42
(3)
A 		21
(-0.6)
A 		35
B 40.2
(1.5)
A 		49.9
(3)
A 		9.8
(-3)
A 		39.8
(1.5)
A 		40
C 9
(-2)
A 		31.4
(3)
A 		23.8
(1.3)
A 		4.6
(-3)
A 		27
avr 26.7
(0.9) 		29.4
(3) 		25.2
(-0.3) 		21.8
(-3) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 87
1 2 3 4 5 6 range
A 64.2
(1.3)
A 		42.2
(-0.2)
A 		1.7
(-3)
A 		4.9
(-2.8)
A 		88.9
(3)
A 		83.3
(2.6)
A 		87
B 3.1
(-3)
A 		9.5
(-2.2)
A 		4
(-2.9)
A 		42.2
(1.7)
A 		52.8
(3)
A 		44.7
(2)
A 		50
C 3.3
(-3)
A 		37.9
(0.4)
A 		8.5
(-2.5)
A 		10.5
(-2.3)
A 		49.9
(1.6)
A 		63.5
(3)
A 		60
avr 23.5
(-1.1) 		29.9
(-0.4) 		4.7
(-3) 		19.2
(-1.5) 		63.9
(3) 		63.8
(3) 		59
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 12
1 2 3 4 range
A 11.2
(3)
A 		1.5
(-3)
A 		11
(2.9)
A 		3.1
(-2)
A 		10
B 12.8
(3)
A 		12.3
(2.7)
A 		2.3
(-3)
A 		8.5
(0.5)
A 		11
C 3
(-1.4)
A 		9
(3)
A 		8.3
(2.5)
A 		0.8
(-3)
A 		8
avr 9
(3) 		7.6
(1.3) 		7.2
(0.8) 		4.1
(-3) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 26
1 2 3 4 5 6 range
A 11.8
(-0.4)
A 		15
(0.3)
A 		0.4
(-3)
A 		1.3
(-2.8)
A 		26.8
(3)
A 		20.3
(1.5)
A 		26
B 1.1
(-3)
A 		3.2
(-2.4)
A 		1
(-3)
A 		11.2
(-0)
A 		21.5
(3)
A 		16.7
(1.6)
A 		21
C 1.2
(-3)
A 		11.6
(0.1)
A 		2.2
(-2.7)
A 		2.1
(-2.7)
A 		16.2
(1.5)
A 		21.3
(3)
A 		20
avr 4.7
(-2) 		9.9
(-0.4) 		1.2
(-3) 		4.9
(-1.9) 		21.5
(3) 		19.4
(2.4) 		20
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 190572_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13360
Sequence Type Exemplar sequence
Representative Public ID F21A3.4 NCBI
Target Description F21A3.4 /REP_DB=WormBase Gene ID /WP=CE09518 /TR=O17827 /GB=CAB04155.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=dystrophin like protein
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074464(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074464 NCBI Caenorhabditis elegans F21A3.4 (F21A3.4) mRNA, complete cds. 11/11 None
SNAP00000007992 ENSEMBL cdna:SNAP chromosome:CEL140:V:15539250:15540570:1 11/11 None
GENEFINDER00000008001 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:15538847:15540570:1 11/11 None
F21A3.4 ENSEMBL cdna:known chromosome:CEL140:V:15539250:15540570:1 gene:F21A3.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:15539249-15540570(+) 100.0 100.0
Public Domain and Genome References
Gene Title dystrophin like protein
Ensembl F21A3.4
Entrez Gene 184749 Entrez gene
SwissProt O17827 EMBL-EBI
WormBase CE09518 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB04155 Hypothetical protein F21A3.4 [Caenorhabditis elegans] ref|NP_506865.1| F21A3.4 [Caenorhabditis elegans] 1.0E-87
blast CAB04155 Hypothetical protein F21A3.4 [Caenorhabditis elegans] ref|NP_506865.1| F21A3.4 [Caenorhabditis elegans] 1.0E-78
blast CAE71627 Hypothetical protein CBG18592 [Caenorhabditis briggsae] 1.0E-49
blast CAE71627 Hypothetical protein CBG18592 [Caenorhabditis briggsae] 7.0E-46
blast CAE71638 Hypothetical protein CBG18605 [Caenorhabditis briggsae] 2.0E-45
Sequence
Target Sequence 
>C. ELEGANS:190572_AT
tcgccttctggagcacaagctcgagctggaaatggagaagaagctgcaactgagcaatcg
gatcgatgtcgttcagtcgcaggtcaccgaactttgggatcgcgtggataaggcgagacg
tcgcgaatcggacatctcgtgtcgcgtcaccgcctgggctcagcatttgtcggagatgat
gaatgaggtgaagctgaaaaaggctaagatgggcacaacgatggaaatatccgcgacact
ttctgctgaaattcaagaaagtctggatttactcgcggaaaagcgagtgattgttcagag
aatgcgggaggaaatcgactatcgtcgccacttgcacaagcaacaactcaaagatttgaa
gctggattgtgacagagaggaggagaaatgcgaatattggaatgataaaagcgctgaaat
cgaaaaagttgtggaaatgctcaaagagcaacgcaaatcgcttggcgaac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCGCCTTCTGGAGCACAAGCTCGAG 576 597 108 Antisense
GAAGCTGCAACTGAGCAATCGGATC 472 343 147 Antisense
GATCGATGTCGTTCAGTCGCAGGTC 57 417 168 Antisense
GCAGGTCACCGAACTTTGGGATCGC 43 293 186 Antisense
AGACGTCGCGAATCGGACATCTCGT 103 69 223 Antisense
CCTGGGCTCAGCATTTGTCGGAGAT 198 267 260 Antisense
TGGAAATATCCGCGACACTTTCTGC 665 547 329 Antisense
GAAAGTCTGGATTTACTCGCGGAAA 695 359 364 Antisense
GAAATCGACTATCGTCGCCACTTGC 227 361 418 Antisense
GTCGCCACTTGCACAAGCAACAACT 668 475 431 Antisense
GAGCAACGCAAATCGCTTGGCGAAC 79 391 553 Antisense
Sequence Source Affymetrix Proprietary Database