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[190569_at] Ubiquinol-cytochrome C reductase complex core protein 2

Description T24C4.1 /REP_DB=WormBase Gene ID /WP=CE19592 /TR=Q9TZ33 /GB=AAC68920.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation /DEF=cytochrome c reductase
Cluster 6grp_highest_10_10 > 79      6grp_high1_10_10 > 98      4grp_highest_8_8 > 20      4grp_high_8_8 > 31      6grp_highest_nonorm > 99      6grp_total > 97      4grp_total > 32      6grp_highest_sub > In      6grp_high1_sub > In      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 778
1 2 3 4 range
A 157
(-3)
P 		423.7
(-0.9)
P 		824.6
(2.2)
P 		931.1
(3)
P 		774
B 192.4
(-3)
P 		369.2
(-1.1)
P 		744.3
(3)
P 		735.5
(2.9)
P 		552
C 153.6
(-3)
P 		316.2
(-1.7)
P 		701.4
(1.5)
P 		891.2
(3)
P 		738
avr 167.7
(-3) 		369.7
(-1.2) 		756.8
(2.2) 		852.6
(3) 		685

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1877
1 2 3 4 5 6 range
A 169.5
(-3)
P 		173.3
(-3)
P 		295.6
(-2.6)
P 		624.7
(-1.5)
P 		1495
(1.5)
P 		1953.6
(3)
P 		1784
B 117.5
(-3)
P 		170.9
(-2.8)
P 		470.7
(-1.8)
P 		719.3
(-1)
P 		1514.5
(1.7)
P 		1917.4
(3)
P 		1800
C 138.5
(-2.9)
P 		104.9
(-3)
P 		415.4
(-2)
P 		680.6
(-1.2)
P 		1467.2
(1.4)
P 		1981.8
(3)
P 		1877
avr 141.8
(-3) 		149.7
(-3) 		393.9
(-2.2) 		674.9
(-1.2) 		1492.2
(1.5) 		1950.9
(3) 		1809
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 194
1 2 3 4 range
A 57.2
(-3)
P 		92
(-1.7)
P 		215.6
(3)
P 		136.3
(-0)
P 		158
B 61.4
(-3)
P 		91.2
(-1.4)
P 		172.5
(3)
P 		156.7
(2.1)
P 		111
C 50.8
(-3)
P 		90.9
(-1.8)
P 		244.5
(3)
P 		150.3
(0.1)
P 		194
avr 56.5
(-3) 		91.4
(-1.6) 		210.9
(3) 		147.8
(0.5) 		154

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 684
1 2 3 4 5 6 range
A 31.2
(-3)
P 		61.6
(-2.6)
P 		64.4
(-2.6)
P 		158.4
(-1.3)
P 		451.1
(2.7)
P 		475.6
(3)
P 		444
B 40.9
(-3)
P 		56.9
(-2.9)
P 		114.3
(-2.3)
P 		190.5
(-1.7)
P 		615.3
(2.1)
P 		715
(3)
P 		674
C 51.3
(-2.8)
P 		32
(-3)
P 		105.7
(-2.3)
P 		136.9
(-2)
P 		474.7
(1.2)
P 		663.4
(3)
P 		631
avr 41.1
(-3) 		50.2
(-2.9) 		94.8
(-2.4) 		161.9
(-1.7) 		513.7
(1.9) 		618
(3) 		577
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 190569_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8138
Sequence Type Exemplar sequence
Representative Public ID T24C4.1 NCBI
Target Description T24C4.1 /REP_DB=WormBase Gene ID /WP=CE19592 /TR=Q9TZ33 /GB=AAC68920.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation /DEF=cytochrome c reductase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064883(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064883 NCBI Caenorhabditis elegans T24C4.1 (T24C4.1) mRNA, complete cds. 11/11 None
SNAP00000044716 ENSEMBL cdna:SNAP chromosome:CEL140:III:876396:881383:1 11/11 None
GENEFINDER00000044727 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:879852:881383:1 11/11 None
T24C4.1 ENSEMBL cdna:known chromosome:CEL140:III:879847:881444:1 gene:T24C4.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:879851-881383(+) 100.0 100.0
Public Domain and Genome References
Gene Title Ubiquinol-cytochrome C reductase complex core protein 2
Ensembl T24C4.1
Entrez Gene 175248 Entrez gene
SwissProt Q9TZ33 EMBL-EBI
WormBase CE19592 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6508 proteolysis inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4222 metalloendopeptidase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAC68920 Hypothetical protein T24C4.1 [Caenorhabditis elegans] ref|NP_497284.1| T24C4.1 [Caenorhabditis elegans] 0.0
blast CAE71622 Hypothetical protein CBG18586 [Caenorhabditis briggsae] 1.0E-161
blast CAA96675 Hypothetical protein T10B10.2 [Caenorhabditis elegans] ref|NP_510521.1| T10B10.2 [Caenorhabditis elegans] 2.0E-79
Protein Domains
Database ID Description E-Value
Pfam IPR007863 EMBL-EBI Peptidase M16, C-terminal 6.3E-18
Pfam IPR001431 EMBL-EBI Peptidase M16, insulinase-like 4.6E-14
Pfam IPR007863 EMBL-EBI Peptidase M16, C-terminal 6.3E-18
Pfam IPR001431 EMBL-EBI Peptidase M16, insulinase-like 4.6E-14
Sequence
Target Sequence 
>C. ELEGANS:190569_AT
gtaccagacgggcatatcatcaccaatcaggggtcacctttcaggggtggagactatcgc
cgtttcgctcgtggaaatgatgttcatataatggttgctggagatggagcagcggttgga
gatctgaaatttttggctgcccaggcagtttttctcgctcacatcggacgtgcttctcca
ctgaaatttgcatcacttccaggatcaaccagtggactcgctcttgcgaatcttccggaa
ggagttactggaagtgcattccaggcaccatatgatggaagtggccttgttggtgtttat
ttgctcgcaaccggagctaatgcagattctgctgttcgagcaactgtcaaggtgttgaga
actactcaagttcaggatattgaaggctgcaagcgccgtgctatcgccgatatcttgttc
aacgctgaaaacaacgtctactctgcctacgatttggcgacaaacgccctctacaacggt
ccagaacagtcggaattgattgcggaaattcaaaaaattcaagaaagtgatgtgcagaag
tacaccaaagccgcgttcgaacgtctcgccatctctgcatatggaaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTACCAGACGGGCATATCATCACCA 265 457 676 Antisense
ACCAATCAGGGGTCACCTTTCAGGG 247 85 697 Antisense
TCAGGGGTGGAGACTATCGCCGTTT 233 623 716 Antisense
TGGCTGCCCAGGCAGTTTTTCTCGC 146 545 809 Antisense
GACGTGCTTCTCCACTGAAATTTGC 420 377 842 Antisense
CAGGATCAACCAGTGGACTCGCTCT 298 209 875 Antisense
GCTCTTGCGAATCTTCCGGAAGGAG 352 295 895 Antisense
ATTGAAGGCTGCAAGCGCCGTGCTA 486 3 1054 Antisense
TATCGCCGATATCTTGTTCAACGCT 685 655 1077 Antisense
CGCTGAAAACAACGTCTACTCTGCC 115 245 1098 Antisense
GTCTCGCCATCTCTGCATATGGAAA 367 471 1238 Antisense
Sequence Source Affymetrix Proprietary Database