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[190568_at] Yeast ABD1 protein like

Description C25A1.3 /REP_DB=WormBase Gene ID /WP=CE08368 /TR=Q9XVS1 /GB=CAB02758.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=Yeast ABD1 protein like
Cluster 6grp_highest_10_10 > 76      6grp_high1_10_10 > 66      4grp_highest_8_8 > 42      4grp_high_8_8 > 49      6grp_highest_nonorm > 83      6grp_total > 67      4grp_total > 54      6grp_highest_sub > Da      6grp_cgc > 38      6grp_high1_sub > Da      6grp_cgc_sub > Da      6grp_total_sub > Increase      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 314
1 2 3 4 range
A 438.8
(3)
P 		332.4
(0.5)
P 		317.9
(0.1)
P 		186.6
(-3)
P 		252
B 484.9
(3)
P 		342.5
(-0.8)
P 		279.9
(-2.4)
P 		257.1
(-3)
P 		228
C 500.4
(3)
P 		312
(-1.4)
P 		405.3
(0.8)
P 		245
(-3)
P 		255
avr 474.7
(3) 		329
(-0.6) 		334.4
(-0.4) 		229.6
(-3) 		245

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 384
1 2 3 4 5 6 range
A 448.7
(-0.9)
P 		365.4
(-3)
P 		493.1
(0.2)
P 		420.8
(-1.6)
P 		453.6
(-0.8)
P 		605.1
(3)
P 		240
B 436.6
(0.2)
P 		311.3
(-2.5)
P 		287.3
(-3)
P 		395.7
(-0.7)
P 		372.9
(-1.2)
P 		566.1
(3)
P 		279
C 385.9
(-1.8)
P 		337.8
(-2.6)
P 		423.2
(-1.1)
P 		431
(-1)
P 		311.8
(-3)
P 		671.1
(3)
P 		359
avr 423.7
(-1.1) 		338.2
(-3) 		401.2
(-1.6) 		415.8
(-1.3) 		379.4
(-2.1) 		614.1
(3) 		276
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 138
1 2 3 4 range
A 159.7
(3)
P 		72.2
(-1)
P 		83.1
(-0.5)
P 		27.3
(-3)
P 		132
B 154.6
(3)
P 		84.6
(-1.2)
P 		64.9
(-2.4)
P 		54.8
(-3)
P 		100
C 165.6
(3)
P 		89.7
(-0.7)
P 		141.3
(1.8)
P 		41.3
(-3)
P 		124
avr 160
(3) 		82.2
(-0.9) 		96.4
(-0.2) 		41.1
(-3) 		119

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 155
1 2 3 4 5 6 range
A 82.7
(-3)
P 		129.9
(1.4)
P 		107.4
(-0.7)
P 		106.7
(-0.8)
P 		136.9
(2)
P 		147.3
(3)
P 		65
B 151.9
(0.5)
P 		103.6
(-1.6)
P 		69.8
(-3)
P 		104.8
(-1.5)
P 		151.5
(0.5)
P 		211.1
(3)
P 		141
C 143
(-0.6)
P 		103.1
(-2.3)
P 		107.7
(-2.1)
P 		86.7
(-3)
P 		100.9
(-2.4)
P 		224.7
(3)
P 		138
avr 125.9
(-1.1) 		112.2
(-2) 		95
(-3) 		99.4
(-2.7) 		129.8
(-0.9) 		194.4
(3) 		99
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 190568_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1123
Sequence Type Exemplar sequence
Representative Public ID C25A1.3 NCBI
Target Description C25A1.3 /REP_DB=WormBase Gene ID /WP=CE08368 /TR=Q9XVS1 /GB=CAB02758.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=Yeast ABD1 protein like
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060273(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060273 NCBI Caenorhabditis elegans Temporarily Assigned Gene name family member (tag-72) (tag-72) mRNA, complete cds. 11/11 None
SNAP00000000651 ENSEMBL cdna:SNAP chromosome:CEL140:I:10168220:10169997:-1 11/11 None
GENEFINDER00000000670 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:10168220:10169997:-1 11/11 None
C25A1.3 ENSEMBL cdna:known chromosome:CEL140:I:10168126:10170004:-1 gene:C25A1.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:10168150-10171328(-) 100.0 100.0
Public Domain and Genome References
Gene Title Yeast ABD1 protein like
Gene Symbol tag-72
Ensembl C25A1.3
Entrez Gene 182875 Entrez gene
SwissProt Q9XVS1 EMBL-EBI
WormBase CE36918 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATH1-121501:256696_AT mRNA capping enzyme family protein at
CANINE_2:CFA.19903.1.S1_S_AT similar to RNA (guanine-7-) methyltransferase cfa
DROSOPHILA_2:1628957_AT lethal (2) 35Bd dm
DROSGENOME1:143217_AT lethal (2) 35Bd dm
CHICKEN:GGAAFFX.8820.1.S1_AT similar to RNA (guanine-7-) methyltransferase gga
HG-U133A:202683_S_AT RNA (guanine-7-) methyltransferase hs
HG-U133_PLUS_2:202683_S_AT RNA (guanine-7-) methyltransferase hs
HG-FOCUS:202683_S_AT RNA (guanine-7-) methyltransferase hs
HG-U133A_2:202683_S_AT RNA (guanine-7-) methyltransferase hs
HG-U133A:202684_S_AT RNA (guanine-7-) methyltransferase hs
HG-U133_PLUS_2:202684_S_AT RNA (guanine-7-) methyltransferase hs
HG-U133A_2:202684_S_AT RNA (guanine-7-) methyltransferase hs
HU35KSUBB:RC_N39616_AT RNA (guanine-7-) methyltransferase hs
HU35KSUBD:RC_T33865_F_AT RNA (guanine-7-) methyltransferase hs
HU35KSUBD:RC_H73184_F_AT RNA (guanine-7-) methyltransferase hs
HU35KSUBD:RC_H69733_F_AT RNA (guanine-7-) methyltransferase hs
U133_X3P:G5478274_3P_A_AT RNA (guanine-7-) methyltransferase hs
U133_X3P:G4506566_3P_A_AT RNA (guanine-7-) methyltransferase hs
HG-U95AV2:38073_AT RNA (guanine-7-) methyltransferase hs
MOE430A:1453106_A_AT RNA (guanine-7-) methyltransferase mm
MOUSE430A_2:1453106_A_AT RNA (guanine-7-) methyltransferase mm
MOUSE430_2:1453106_A_AT RNA (guanine-7-) methyltransferase mm
MG-U74BV2:113347_AT RNA (guanine-7-) methyltransferase mm
MG-U74BV2:106133_AT RNA (guanine-7-) methyltransferase mm
MG-U74BV2:164775_F_AT RNA (guanine-7-) methyltransferase mm
MG-U74BV2:162687_AT RNA (guanine-7-) methyltransferase mm
MG-U74CV2:168166_AT RNA (guanine-7-) methyltransferase mm
MOE430B:1436328_AT RNA (guanine-7-) methyltransferase mm
MOUSE430_2:1436328_AT RNA (guanine-7-) methyltransferase mm
MOE430B:1440002_AT RNA (guanine-7-) methyltransferase mm
MOUSE430_2:1440002_AT RNA (guanine-7-) methyltransferase mm
MOE430B:1446442_AT RNA (guanine-7-) methyltransferase mm
MOUSE430_2:1446442_AT RNA (guanine-7-) methyltransferase mm
MU19KSUBC:TC35456_AT RNA (guanine-7-) methyltransferase, mRNA (cDNA clone MGC:28566 IMAGE:4208274) mm
MU19KSUBC:TC35850_AT RNA (guanine-7-) methyltransferase, mRNA (cDNA clone MGC:28566 IMAGE:4208274) mm
RG-U34A:RC_AA800016_AT RNA (guanine-7-) methyltransferase (predicted) rn
RG-U34C:RC_AI177333_AT RNA (guanine-7-) methyltransferase (predicted) rn
RAE230A:1398572_AT RNA (guanine-7-) methyltransferase (predicted) rn
RAT230_2:1398572_AT RNA (guanine-7-) methyltransferase (predicted) rn
RAE230A:1372867_AT RNA (guanine-7-) methyltransferase (predicted) rn
RAT230_2:1372867_AT RNA (guanine-7-) methyltransferase (predicted) rn
RAE230B:1382998_AT RNA (guanine-7-) methyltransferase (predicted) rn
RAT230_2:1382998_AT RNA (guanine-7-) methyltransferase (predicted) rn
RG-U34B:RC_AI044778_AT RNA (guanine-7-) methyltransferase (predicted) rn
YEAST_2:1775643_AT Methyltransferase, catalyzes the transfer of a methyl group from S-adenosylmethionine to the GpppN terminus of capped mRNA Sc
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6370 mRNA capping inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB02758 Hypothetical protein C25A1.3 [Caenorhabditis elegans] ref|NP_492674.2| Temporarily Assigned Gene name family member (tag-72) [Caenorhabditis elegans] 0.0
blast CAE66861 Hypothetical protein CBG12234 [Caenorhabditis briggsae] 1.0E-141
blast CAG11655 unnamed protein product [Tetraodon nigroviridis] 2.0E-63
Protein Families
Method ID Description E-Value
ec ABD1_YEAST (P32783) mRNA (guanine-N(7)-)-methyltransferase (EC 2.1.1.56) 1.0E-106
Protein Domains
Database ID Description E-Value
Pfam IPR004971 EMBL-EBI mRNA capping enzyme, large subunit 1.0E-126
Sequence
Target Sequence 
>C. ELEGANS:190568_AT
agttccactattcggagccaagttccatttttcactcgatgagcaagtcaactgtcctga
gtttctggcatattttccacttgtcaaacacctgctcgaagagcttgacatggagcttct
tttcgtgcataatttcgctgaagcaatcaacaaatggttggaaccaggacgccgacttct
cgaatcaatgacaggtcttgaaacgtatccaaatgagaagctcagtggaaaatccgacga
cgagtacctggaggcaaaagctaaactcgacgcatttccagaagatgagagaatcaagac
gatgggaacactttcaaaatctgaatgggaagctatctgtatgtatttggtgtttggttt
ccgaaagaagaagtctgaagctgagaaaacagaagaagaaccagctaccacgaagccagt
tgctgaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGTTCCACTATTCGGAGCCAAGTTC 389 65 708 Antisense
AAGTTCCATTTTTCACTCGATGAGC 244 157 727 Antisense
TCGATGAGCAAGTCAACTGTCCTGA 653 601 743 Antisense
ACTGTCCTGAGTTTCTGGCATATTT 538 97 758 Antisense
GGCATATTTTCCACTTGTCAAACAC 493 537 774 Antisense
TTGTCAAACACCTGCTCGAAGAGCT 359 707 788 Antisense
TGACATGGAGCTTCTTTTCGTGCAT 489 571 813 Antisense
ATGGTTGGAACCAGGACGCCGACTT 498 51 861 Antisense
GACGCCGACTTCTCGAATCAATGAC 257 381 875 Antisense
AGCTAAACTCGACGCATTTCCAGAA 584 77 966 Antisense
AGCTACCACGAAGCCAGTTGCTGAA 109 79 1110 Antisense
Sequence Source Affymetrix Proprietary Database