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[190566_at] Drosphila REF (2)P like

Description T12G3.1 /REP_DB=WormBase Gene ID /WP=CE06438 /TR=Q22436 /GB=CAA92982.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=Drosphila REF (2)P like
Cluster 6grp_highest_10_10 > 82      6grp_high1_10_10 > 39      4grp_highest_8_8 > 30      4grp_high_8_8 > 05      6grp_highest_nonorm > 57      6grp_total > 38      4grp_total > 04      6grp_highest_sub > Cu      6grp_high1_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 5725
1 2 3 4 range
A 2562.5
(-1.7)
P 		1512.2
(-2.8)
P 		1337
(-3)
P 		6797.5
(3)
P 		5461
B 2467.6
(-1.7)
P 		1465.5
(-2.8)
P 		1302.4
(-3)
P 		6874.1
(3)
P 		5572
C 2405.7
(-1.9)
P 		1476.3
(-2.9)
P 		1381.8
(-3)
P 		7027.3
(3)
P 		5646
avr 2478.6
(-1.8) 		1484.7
(-2.8) 		1340.4
(-3) 		6899.6
(3) 		5559

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1936
1 2 3 4 5 6 range
A 3254.5
(2.8)
P 		2516.8
(-0.1)
P 		1796.7
(-3)
P 		2300.8
(-1)
P 		2228.7
(-1.3)
P 		3302.8
(3)
P 		1506
B 3468.8
(3)
P 		2134.9
(-1.8)
P 		1811.6
(-3)
P 		2339
(-1.1)
P 		2027
(-2.2)
P 		2624.1
(-0.1)
P 		1657
C 3732.4
(3)
P 		2247.4
(-1.6)
P 		2339.3
(-1.4)
P 		1812.5
(-3)
P 		2890.5
(0.4)
P 		2330.5
(-1.4)
P 		1920
avr 3485.2
(3) 		2299.7
(-1.7) 		1982.5
(-3) 		2150.8
(-2.3) 		2382.1
(-1.4) 		2752.5
(0.1) 		1503
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1163
1 2 3 4 range
A 933
(2.4)
P 		328.3
(-3)
P 		349.5
(-2.8)
P 		995
(3)
P 		667
B 786.9
(-0.5)
P 		361.9
(-2.7)
P 		301.8
(-3)
P 		1464.9
(3)
P 		1163
C 796.3
(-0.1)
P 		424.4
(-3)
P 		481.6
(-2.5)
P 		1184.9
(3)
P 		761
avr 838.7
(0.3) 		371.5
(-3) 		377.6
(-3) 		1214.9
(3) 		843

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1019
1 2 3 4 5 6 range
A 599.9
(-0.5)
P 		895.1
(3)
P 		391.3
(-3)
P 		583.5
(-0.7)
P 		672.5
(0.3)
P 		804.1
(1.9)
P 		504
B 1207
(3)
P 		710.6
(-0.9)
P 		439.9
(-3)
P 		619.5
(-1.6)
P 		823.5
(0)
P 		978.5
(1.2)
P 		767
C 1383.4
(3)
P 		685.8
(-1.1)
P 		595.4
(-1.6)
P 		364.5
(-3)
P 		935.3
(0.4)
P 		780.1
(-0.6)
P 		1019
avr 1063.4
(3) 		763.8
(-0.1) 		475.5
(-3) 		522.5
(-2.5) 		810.4
(0.4) 		854.2
(0.9) 		588
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 190566_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9954
Sequence Type Exemplar sequence
Representative Public ID T12G3.1 NCBI
Target Description T12G3.1 /REP_DB=WormBase Gene ID /WP=CE06438 /TR=Q22436 /GB=CAA92982.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=Drosphila REF (2)P like
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069879(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069879 NCBI Caenorhabditis elegans T12G3.1 (T12G3.1) mRNA, complete cds. 11/11 None
SNAP00000042347 ENSEMBL cdna:SNAP chromosome:CEL140:IV:12034253:12036691:1 11/11 None
GENEFINDER00000042353 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:12034253:12036691:1 11/11 None
T12G3.1.2 ENSEMBL cdna:known chromosome:CEL140:IV:12034223:12037022:1 gene:T12G3.1 11/11 None
T12G3.1.3 ENSEMBL cdna:known chromosome:CEL140:IV:12034251:12036868:1 gene:T12G3.1 11/11 None
T12G3.1.1 ENSEMBL cdna:known chromosome:CEL140:IV:12034253:12037022:1 gene:T12G3.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:12034078-12036697(+) 100.0 100.0
Public Domain and Genome References
Gene Title Drosphila REF (2)P like
Ensembl T12G3.1
Entrez Gene 178139 Entrez gene
SwissProt Q22436 EMBL-EBI
WormBase CE37554 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
8270 zinc ion binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA92982 Hypothetical protein T12G3.1 [Caenorhabditis elegans] ref|NP_502280.2| T12G3.1 [Caenorhabditis elegans] 0.0
blast CAE62166 Hypothetical protein CBG06213 [Caenorhabditis briggsae] 1.0E-155
Protein Domains
Database ID Description E-Value
Pfam IPR000433 EMBL-EBI Zn-finger, ZZ type 1.1E-10
Sequence
Target Sequence 
>C. ELEGANS:190566_AT
gactttgtcctatacgatctttacggaaactccttggaagctttgttgagaggtcgttcg
agctctagaatcgccgatcctccgaccactccaaataccgaaccagccaccacagagtta
gcttcaacgacctctgcaactccagccgtcactgctccagcatcaattgttccagttact
ccaactgcaccaattgttgaaactctgatcgttccaccacttccaccagtggaatcaaat
ccagaagaggttacaccaatggtgactgcaccaatctcaattcactcttctttcgagaac
atttcttcggatttcgagagcctcagtccatcatggggaggatacccagatttggaagct
gcacaacgtctagaagtcatcgatgataacttactcgacttctctga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GACTTTGTCCTATACGATCTTTACG 139 373 1663 Antisense
GTTCGAGCTCTAGAATCGCCGATCC 652 441 1718 Antisense
GAACCAGCCACCACAGAGTTAGCTT 392 345 1762 Antisense
AGAGTTAGCTTCAACGACCTCTGCA 361 69 1776 Antisense
TGCTCCAGCATCAATTGTTCCAGTT 21 583 1815 Antisense
TTGTTCCAGTTACTCCAACTGCACC 460 707 1829 Antisense
TGTTGAAACTCTGATCGTTCCACCA 414 563 1857 Antisense
TGACTGCACCAATCTCAATTCACTC 17 571 1925 Antisense
TCGGATTTCGAGAGCCTCAGTCCAT 656 605 1969 Antisense
GGAAGCTGCACAACGTCTAGAAGTC 322 531 2016 Antisense
ATGATAACTTACTCGACTTCTCTGA 577 45 2045 Antisense
Sequence Source Affymetrix Proprietary Database