[Home] | [Total List]

[190563_at]

Description F39D8.3 /REP_DB=WormBase Gene ID /WP=CE05835 /TR=Q20190 /GB=CAA93658.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation /DEF=carbonic anhydrase like
Cluster 6grp_total > 73      4grp_total > 41      6grp_total_sub > Hat      6grp_rule_based > S2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 117
1 2 3 4 range
A 27.3
(-3)
A 		68.4
(0.1)
A 		106.7
(3)
A 		51.8
(-1.1)
A 		79
B 5.3
(-3)
A 		118.6
(3)
A 		60.5
(-0.1)
M 		14.8
(-2.5)
A 		113
C 6.9
(-3)
A 		86.9
(1.2)
P 		94
(1.5)
P 		122.3
(3)
A 		115
avr 13.2
(-3) 		91.3
(3) 		87.1
(2.7) 		63
(0.8) 		78

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 87
1 2 3 4 5 6 range
A 11.4
(-3)
A 		90.8
(3)
P 		59.6
(0.6)
P 		75.2
(1.8)
P 		39.2
(-0.9)
P 		50.8
(-0)
A 		79
B 6.6
(-3)
A 		93.5
(3)
M 		64.3
(1)
A 		49.4
(-0)
P 		85.1
(2.4)
P 		51.4
(0.1)
A 		87
C 16.7
(-3)
A 		40.7
(-0.6)
A 		72.4
(2.6)
A 		74.5
(2.8)
P 		76.4
(3)
P 		59.8
(1.3)
P 		60
avr 11.6
(-3) 		75
(3) 		65.4
(2.1) 		66.4
(2.2) 		66.9
(2.2) 		54
(1) 		63
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 31
1 2 3 4 range
A 9.9
(-2.3)
A 		14.8
(-0.9)
A 		27.9
(3)
A 		7.6
(-3)
A 		20
B 1.7
(-3)
A 		29.3
(3)
A 		14
(-0.3)
M 		3.2
(-2.7)
A 		28
C 2.3
(-3)
A 		25
(1.5)
P 		32.8
(3)
P 		20.6
(0.6)
A 		31
avr 4.6
(-3) 		23
(2.4) 		24.9
(3) 		10.5
(-1.3) 		20

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 33
1 2 3 4 5 6 range
A 2.1
(-3)
A 		32.3
(3)
P 		13
(-0.8)
P 		19.1
(0.4)
P 		11.8
(-1.1)
P 		12.4
(-1)
A 		30
B 2.3
(-3)
A 		31.1
(2.3)
M 		15.6
(-0.5)
A 		13.1
(-1)
P 		34.6
(3)
P 		19.2
(0.1)
A 		32
C 6.2
(-3)
A 		12.4
(-1)
A 		18.4
(1)
A 		15
(-0.1)
P 		24.7
(3)
P 		20
(1.5)
P 		19
avr 3.5
(-3) 		25.3
(3) 		15.7
(0.4) 		15.7
(0.4) 		23.7
(2.6) 		17.2
(0.8) 		22
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 190563_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17970
Sequence Type Exemplar sequence
Representative Public ID F39D8.3 NCBI
Target Description F39D8.3 /REP_DB=WormBase Gene ID /WP=CE05835 /TR=Q20190 /GB=CAA93658.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation /DEF=carbonic anhydrase like
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_078147
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
GENEFINDER00000018952 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:15422442:15424764:1 10/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_078147 8/11 Cross Hyb Matching Probes None
SNAP00000018946 7/11 Cross Hyb Matching Probes None
F39D8.3 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:15422385-15424764(+) 100.0 100.0
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA93658 Hypothetical protein F39D8.3 [Caenorhabditis elegans] ref|NP_510548.2| F39D8.3 [Caenorhabditis elegans] 0.0
blast CAE63307 Hypothetical protein CBG07696 [Caenorhabditis briggsae] 3.0E-76
blast AAO21388 Hypothetical protein Y95B8A.6b [Caenorhabditis elegans] ref|NP_871819.1| Y95B8A.6b [Caenorhabditis elegans] 1.0E-11
Sequence
Target Sequence 
>C. ELEGANS:190563_AT
atcacagccagaacttgtagcggagctcaaacagaagggtacctacaatccagagttgat
ggcgtgggatgcactaggagtcatcaggtttttagaccgaactattcatgaacattatca
aaaaagctcggaaaaaaataaatcaaaaaccgaagtcatcgagcgaaatgtagaagcatt
ggaaaaactgatgagagagttgaacgtcacttgtgatctgaaatccgacgagctgaggag
caaatttcataatgtttccttaccactttcttttccaggagaatcacacatcgtgccatt
cgggtgtgacaaacgaggagcggaagaggatggctacctgcgtctctgcggtgcgtgtca
ggcaattcgtcgcctgcccgacactttcttccctccatttatcaacgaagtgacatgcga
cactgataaggcgtgcctttatttctacgactatccgcacgga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATCACAGCCAGAACTTGTAGCGGAG 543 27 432 Antisense
GAAGGGTACCTACAATCCAGAGTTG 398 285 465 Antisense
GATGGCGTGGGATGCACTAGGAGTC 249 407 489 Antisense
ATTTCATAATGTTTCCTTACCACTT 164 17 675 Antisense
TCCTTACCACTTTCTTTTCCAGGAG 9 591 688 Antisense
TTTCCAGGAGAATCACACATCGTGC 179 669 703 Antisense
ATCGTGCCATTCGGGTGTGACAAAC 581 35 721 Antisense
GGAAGAGGATGGCTACCTGCGTCTC 273 529 753 Antisense
TGCGGTGCGTGTCAGGCAATTCGTC 162 583 778 Antisense
AAGGCGTGCCTTTATTTCTACGACT 485 157 859 Antisense
TTATTTCTACGACTATCCGCACGGA 575 679 870 Antisense
Sequence Source Affymetrix Proprietary Database