[Home] | [Total List]

[190561_at] ring canal like protein

Description R09A8.3 /REP_DB=WormBase Gene ID /WP=CE03539 /TR=Q21854 /GB=CAA92005.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation /DEF=ring canal like protein
Cluster 6grp_highest_10_10 > 68      6grp_high1_10_10 > 85      4grp_highest_8_8 > 15      4grp_high_8_8 > 14      6grp_highest_nonorm > 83      6grp_total > 75      4grp_total > 09      6grp_highest_sub > In      6grp_cgc > 57      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1484
1 2 3 4 range
A 321.5
(-3)
P 		411
(-2.6)
P 		369.3
(-2.8)
P 		1805
(3)
P 		1484
B 349.7
(-3)
P 		476.3
(-2.4)
P 		503.4
(-2.2)
P 		1547
(3)
P 		1197
C 353.6
(-3)
P 		489.4
(-2.2)
P 		492.7
(-2.2)
P 		1390.8
(3)
P 		1037
avr 341.6
(-3) 		458.9
(-2.4) 		455.1
(-2.5) 		1580.9
(3) 		1239

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 466
1 2 3 4 5 6 range
A 288.3
(-3)
P 		427.6
(-1.2)
P 		582
(0.8)
P 		488.2
(-0.4)
P 		541.1
(0.3)
P 		754.1
(3)
P 		466
B 445.1
(-3)
P 		465.4
(-2.5)
P 		644.7
(1.5)
P 		557.7
(-0.5)
P 		550.5
(-0.6)
P 		711.1
(3)
P 		266
C 434.6
(-2.4)
P 		412.7
(-3)
P 		458.7
(-1.7)
P 		448.5
(-2)
P 		486.6
(-0.9)
P 		620
(3)
P 		207
avr 389.3
(-3) 		435.2
(-2.1) 		561.8
(0.4) 		498.1
(-0.9) 		526.1
(-0.3) 		695.1
(3) 		306
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 241
1 2 3 4 range
A 117.1
(-2)
P 		89.2
(-3)
P 		96.5
(-2.7)
P 		264.2
(3)
P 		175
B 111.5
(-3)
P 		117.6
(-2.8)
P 		116.6
(-2.9)
P 		329.7
(3)
P 		218
C 117.1
(-3)
P 		140.7
(-1.8)
P 		171.7
(-0.2)
P 		234.5
(3)
P 		117
avr 115.2
(-3) 		115.8
(-3) 		128.3
(-2.5) 		276.1
(3) 		161

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 212
1 2 3 4 5 6 range
A 53.2
(-3)
P 		152.1
(1.6)
P 		126.8
(0.4)
P 		123.8
(0.2)
P 		163.3
(2.1)
P 		183.6
(3)
P 		130
B 154.9
(-2.6)
P 		154.9
(-2.6)
P 		156.5
(-2.6)
P 		147.7
(-3)
P 		223.7
(0.9)
P 		265.2
(3)
P 		118
C 161.1
(0.6)
P 		125.9
(-1.2)
P 		116.7
(-1.6)
P 		90.2
(-3)
P 		157.5
(0.4)
P 		207.5
(3)
P 		117
avr 123.1
(-2.8) 		144.3
(-1.6) 		133.3
(-2.2) 		120.6
(-3) 		181.5
(0.7) 		218.8
(3) 		98
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 190561_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17624
Sequence Type Exemplar sequence
Representative Public ID R09A8.3 NCBI
Target Description R09A8.3 /REP_DB=WormBase Gene ID /WP=CE03539 /TR=Q21854 /GB=CAA92005.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation /DEF=ring canal like protein
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077708(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077708 NCBI Caenorhabditis elegans Temporarily Assigned Gene name family member (tag-147) (tag-147) mRNA, complete cds. 11/11 None
SNAP00000001739 ENSEMBL cdna:SNAP chromosome:CEL140:X:12625162:12627613:-1 11/11 None
GENEFINDER00000001747 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:12625162:12628964:-1 11/11 None
R09A8.3.2 ENSEMBL cdna:known chromosome:CEL140:X:12624576:12634275:-1 gene:R09A8.3 11/11 None
R09A8.3.1 ENSEMBL cdna:known chromosome:CEL140:X:12624576:12629031:-1 gene:R09A8.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:12625161-12628964(-) 100.0 100.0
Public Domain and Genome References
Gene Title ring canal like protein
Gene Symbol tag-147
Ensembl R09A8.3
Entrez Gene 181410 Entrez gene
SwissProt Q21854 EMBL-EBI
WormBase CE03539 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE:1586152_AT similar to influenza virus NS1A binding protein isoform a cfa
CANINE_2:CFA.15025.1.S1_AT similar to influenza virus NS1A binding protein isoform a cfa
CANINE_2:CFA.21386.1.S1_S_AT similar to influenza virus NS1A binding protein isoform a cfa
CANINE_2:CFA.21386.2.S1_AT similar to influenza virus NS1A binding protein isoform a cfa
CANINE_2:CFAAFFX.20987.1.S1_S_AT similar to influenza virus NS1A binding protein isoform a cfa
CHICKEN:GGA.13140.1.S1_S_AT influenza virus NS1A binding protein gga
CHICKEN:GGA.13140.2.S1_AT influenza virus NS1A binding protein gga
CHICKEN:GGA.8181.1.S1_AT influenza virus NS1A binding protein gga
CHICKEN:GGA.8181.2.S1_A_AT influenza virus NS1A binding protein gga
CHICKEN:GGAAFFX.26418.1.S1_S_AT influenza virus NS1A binding protein gga
HG-U133_PLUS_2:206245_S_AT influenza virus NS1A binding protein hs
HG-U133A:206245_S_AT influenza virus NS1A binding protein hs
HG-U133A_2:206245_S_AT influenza virus NS1A binding protein hs
HG-U133_PLUS_2:244235_AT influenza virus NS1A binding protein hs
HG-U133B:244235_AT influenza virus NS1A binding protein hs
HG-U133_PLUS_2:201362_AT influenza virus NS1A binding protein hs
HG-U133A:201362_AT influenza virus NS1A binding protein hs
HG-FOCUS:201362_AT influenza virus NS1A binding protein hs
HG-U133A_2:201362_AT influenza virus NS1A binding protein hs
HG-U133_PLUS_2:201363_S_AT influenza virus NS1A binding protein hs
HG-U133A:201363_S_AT influenza virus NS1A binding protein hs
HG-U133A_2:201363_S_AT influenza virus NS1A binding protein hs
HU35KSUBA:RC_AA182641_AT influenza virus NS1A binding protein hs
HU35KSUBC:RC_AA487115_AT influenza virus NS1A binding protein hs
U133_X3P:G5453803_3P_A_AT influenza virus NS1A binding protein hs
U133_X3P:G4240188_3P_A_AT influenza virus NS1A binding protein hs
U133_X3P:G12003206_3P_AT influenza virus NS1A binding protein hs
U133_X3P:HS.5759.0.A1_3P_X_AT influenza virus NS1A binding protein hs
U133_X3P:HS.5759.0.A1_3P_AT influenza virus NS1A binding protein hs
HG-U95AV2:33752_AT influenza virus NS1A binding protein hs
HG-U95C:60866_S_AT influenza virus NS1A binding protein hs
HG-U95C:61305_I_AT influenza virus NS1A binding protein hs
HG-U95C:61306_R_AT influenza virus NS1A binding protein hs
HG-U95D:75308_AT influenza virus NS1A binding protein hs
HG-U133_PLUS_2:239152_AT Influenza virus NS1A binding protein hs
HG-U133B:239152_AT Influenza virus NS1A binding protein hs
HG-U95B:55236_R_AT Influenza virus NS1A binding protein hs
HU35KSUBB:RC_N30626_AT Influenza virus NS1A binding protein hs
U133_X3P:HS.243023.0.A1_3P_AT Influenza virus NS1A binding protein hs
MOUSE430_2:1425718_A_AT influenza virus NS1A binding protein mm
MOE430A:1425718_A_AT influenza virus NS1A binding protein mm
MOUSE430A_2:1425718_A_AT influenza virus NS1A binding protein mm
MOE430A:1420961_A_AT influenza virus NS1A binding protein mm
MOUSE430A_2:1420961_A_AT influenza virus NS1A binding protein mm
MOUSE430_2:1420961_A_AT influenza virus NS1A binding protein mm
MU11KSUBA:AA275288_S_AT influenza virus NS1A binding protein mm
MG-U74AV2:97302_AT influenza virus NS1A binding protein mm
MG-U74BV2:116310_AT influenza virus NS1A binding protein mm
MG-U74BV2:116311_AT influenza virus NS1A binding protein mm
MOE430A:1450084_S_AT influenza virus NS1A binding protein mm
MOUSE430A_2:1450084_S_AT influenza virus NS1A binding protein mm
MOUSE430_2:1450084_S_AT influenza virus NS1A binding protein mm
MU19KSUBC:TC35258_AT Influenza virus NS1A binding protein (Ivns1abp), transcript variant 2, mRNA mm
MU19KSUBC:TC35879_R_AT Influenza virus NS1A binding protein (Ivns1abp), transcript variant 2, mRNA mm
MU19KSUBC:TC35879_S_AT Influenza virus NS1A binding protein (Ivns1abp), transcript variant 2, mRNA mm
RG-U34A:RC_AA799539_AT influenza virus NS1A binding protein (predicted) rn
RAE230A:1389521_AT influenza virus NS1A binding protein (predicted) rn
RAT230_2:1389521_AT influenza virus NS1A binding protein (predicted) rn
RG-U34B:RC_AI028895_AT Influenza virus NS1A binding protein (predicted) rn
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
5515 protein binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA92005 Hypothetical protein R09A8.3 [Caenorhabditis elegans] ref|NP_510109.1| Temporarily Assigned Gene name family member (tag-147) [Caenorhabditis elegans] 0.0
blast CAE57232 Hypothetical protein CBG00102 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR006652 EMBL-EBI Kelch repeat 1.9E-15
Pfam IPR006652 EMBL-EBI Kelch repeat 2.0E-10
Pfam IPR006652 EMBL-EBI Kelch repeat 1.1E-10
Pfam IPR006652 EMBL-EBI Kelch repeat 2.5E-14
Pfam IPR006652 EMBL-EBI Kelch repeat 5.1E-14
Pfam IPR006652 EMBL-EBI Kelch repeat 5.9E-5
Pfam IPR000210 EMBL-EBI BTB/POZ domain 5.4E-13
Pfam IPR000210 EMBL-EBI BTB/POZ domain 1.4E-7
Pfam IPR006652 EMBL-EBI Kelch repeat 1.9E-15
Pfam IPR006652 EMBL-EBI Kelch repeat 2.0E-10
Pfam IPR006652 EMBL-EBI Kelch repeat 1.1E-10
Pfam IPR006652 EMBL-EBI Kelch repeat 2.5E-14
Pfam IPR006652 EMBL-EBI Kelch repeat 5.1E-14
Pfam IPR006652 EMBL-EBI Kelch repeat 5.9E-5
Pfam IPR006652 EMBL-EBI Kelch repeat 1.9E-15
Pfam IPR006652 EMBL-EBI Kelch repeat 2.0E-10
Pfam IPR006652 EMBL-EBI Kelch repeat 1.1E-10
Pfam IPR006652 EMBL-EBI Kelch repeat 2.5E-14
Pfam IPR006652 EMBL-EBI Kelch repeat 5.1E-14
Pfam IPR006652 EMBL-EBI Kelch repeat 5.9E-5
Sequence
Target Sequence 
>C. ELEGANS:190561_AT
ggaaagggcttgttgtggctgccggtggttgcgatcgctggacatgcatggactctgttg
aagcattcgatccaaaaaccaatgcatggcgtcaacttccgaagcttcgtcaggcaagac
gcggaggtgctgtggctgtggttcgtgacactttatacgtgattggagggcacgatggaa
ctcagtcattggatactgtggagattctagacagtccttcgtctcaatggcgtgttggtc
caactttgactactccaagagccaacacccatgccgttgtcaccgccggaaacgtgatct
tctgcattggaggtttcaacggcgtcaagttccttgacacaatcgagcttttggagaatg
aacaaatcggctggcgtaactggcagcactgtccacagcagattctcgaagagcacgagg
aagaagactcaagcctcatggacgatg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGAAAGGGCTTGTTGTGGCTGCCGG 232 527 1988 Antisense
CGATCGCTGGACATGCATGGACTCT 277 249 2019 Antisense
CAATGCATGGCGTCAACTTCCGAAG 508 181 2067 Antisense
CAAGACGCGGAGGTGCTGTGGCTGT 585 183 2102 Antisense
GATTCTAGACAGTCCTTCGTCTCAA 602 431 2190 Antisense
GTTGGTCCAACTTTGACTACTCCAA 40 435 2221 Antisense
CACCGCCGGAAACGTGATCTTCTGC 175 201 2268 Antisense
GGTTTCAACGGCGTCAAGTTCCTTG 68 503 2299 Antisense
GGCTGGCGTAACTGGCAGCACTGTC 308 541 2356 Antisense
AGCACTGTCCACAGCAGATTCTCGA 468 77 2372 Antisense
GAAGACTCAAGCCTCATGGACGATG 579 339 2410 Antisense
Sequence Source Affymetrix Proprietary Database