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[190560_at] ADP,ATP carrier protein

Description R07E3.4 /REP_DB=WormBase Gene ID /WP=CE02298 /TR=Q21809 /GB=CAA89069.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation /DEF=ADP,ATP carrier protein
Cluster 6grp_highest_10_10 > 56      6grp_high1_10_10 > 65      4grp_highest_8_8 > 22      4grp_high_8_8 > 14      6grp_highest_nonorm > 97      6grp_total > 65      4grp_total > 01      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 3942
1 2 3 4 range
A 132
(-3)
P 		269.9
(-2.8)
P 		350.6
(-2.6)
P 		3775.9
(3)
P 		3644
B 126.3
(-3)
P 		278.9
(-2.7)
P 		390.5
(-2.6)
P 		3652
(3)
P 		3526
C 140.5
(-3)
P 		267.7
(-2.8)
P 		394.8
(-2.6)
P 		4068
(3)
P 		3928
avr 132.9
(-3) 		272.2
(-2.8) 		378.6
(-2.6) 		3832
(3) 		3699

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 978
1 2 3 4 5 6 range
A 693.4
(-2.5)
P 		991.2
(0.4)
P 		1249.8
(3)
P 		994.4
(0.5)
P 		644.9
(-3)
P 		1225.6
(2.8)
P 		605
B 771.6
(-2.9)
P 		1010
(-0.3)
P 		1232.2
(2.1)
P 		993.7
(-0.5)
P 		764.7
(-3)
P 		1314.4
(3)
P 		550
C 687.7
(-2.8)
P 		969.9
(-1.1)
P 		1153.1
(0.1)
P 		972.4
(-1)
P 		657.4
(-3)
P 		1623
(3)
P 		966
avr 717.6
(-2.8) 		990.4
(-0.4) 		1211.7
(1.5) 		986.8
(-0.4) 		689
(-3) 		1387.7
(3) 		699
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 738
1 2 3 4 range
A 48.1
(-3)
P 		58.6
(-2.9)
P 		91.7
(-2.5)
P 		552.7
(3)
P 		505
B 40.3
(-3)
P 		68.9
(-2.8)
P 		90.5
(-2.6)
P 		778.2
(3)
P 		738
C 46.5
(-3)
P 		77
(-2.7)
P 		137.6
(-2.1)
P 		685.9
(3)
P 		639
avr 45
(-3) 		68.2
(-2.8) 		106.6
(-2.4) 		672.3
(3) 		627

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 416
1 2 3 4 5 6 range
A 127.8
(-3)
P 		352.5
(3)
P 		272.2
(0.9)
P 		252.2
(0.3)
P 		194.6
(-1.2)
P 		298.4
(1.6)
P 		225
B 268.5
(-2.9)
P 		336.2
(-1.1)
P 		299.2
(-2)
P 		263.2
(-3)
P 		310.7
(-1.7)
P 		490.1
(3)
P 		227
C 254.9
(-2)
P 		296
(-1.3)
P 		293.5
(-1.3)
P 		195.6
(-3)
P 		212.7
(-2.7)
P 		543.3
(3)
P 		348
avr 217.1
(-3) 		328.2
(-0.1) 		288.3
(-1.1) 		237
(-2.5) 		239.3
(-2.4) 		443.9
(3) 		227
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 190560_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16422
Sequence Type Exemplar sequence
Representative Public ID R07E3.4 NCBI
Target Description R07E3.4 /REP_DB=WormBase Gene ID /WP=CE02298 /TR=Q21809 /GB=CAA89069.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation /DEF=ADP,ATP carrier protein
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077332(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077332 NCBI Caenorhabditis elegans R07E3.4 (R07E3.4) mRNA, complete cds. 11/11 None
SNAP00000043088 ENSEMBL cdna:SNAP chromosome:CEL140:X:10330646:10331801:-1 11/11 None
GENEFINDER00000043098 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:10330646:10331801:-1 11/11 None
R07E3.4 ENSEMBL cdna:known chromosome:CEL140:X:10330644:10331801:-1 gene:R07E3.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:10330645-10331801(-) 100.0 100.0
Public Domain and Genome References
Gene Title ADP,ATP carrier protein
Ensembl R07E3.4
Entrez Gene 187678 Entrez gene
SwissProt Q21809 EMBL-EBI
WormBase CE02298 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6810 transport inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
5743 mitochondrial inner membrane inferred from electronic annotation QuickGO AmiGO
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
5215 transporter activity inferred from electronic annotation QuickGO AmiGO
5488 binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA89069 Hypothetical protein R07E3.4 [Caenorhabditis elegans] ref|NP_509733.1| R07E3.4 [Caenorhabditis elegans] 1.0E-157
blast CAE70563 Hypothetical protein CBG17210 [Caenorhabditis briggsae] 1.0E-141
blast CAA71629 ADP/ATP translocase [Drosophila melanogaster] gb|AAO41648.1| CG1683-PB, isoform B [Drosophila melanogaster] gb|AAF47956.1| CG1683-PA, isoform A [Drosophila melanogaster] ref|NP_788898.1| CG1683-PB, isoform B [Drosophila melanogaster] ref|NP_511110.1| CG1683-PA, isoform A [Drosophila melanogaster] 2.0E-66
Protein Domains
Database ID Description E-Value
Pfam IPR001993 EMBL-EBI Mitochondrial substrate carrier 2.4E-26
Pfam IPR001993 EMBL-EBI Mitochondrial substrate carrier 1.1E-27
Pfam IPR001993 EMBL-EBI Mitochondrial substrate carrier 1.2E-16
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_509733.1 1 115-137
R07E3.4 1 115-137
SNAP00000043088 1 115-137
GENEFINDER00000043098 1 115-137
Sequence
Target Sequence 
>C. ELEGANS:190560_AT
ctcaattttgctttccgtgacatttacagaaatacactattgaaaaatgttgatcggaat
gaaagttttggaaaatttttggctggtacatttgtttcgggtggtcttggtggagcaact
actttattcatgctttatccatttgactttgcaagaaccagactggcgttagacgtcaaa
aaagatggatccagaaaatacaaaggaatggtagactgccttaagaaaattaaagccagc
gaaggagttgcctcgtggtataaaggattatcatcagctcttcagtttgtgatagcttct
cgagcaattttctttggaatcttcgacagtatcagaacaagtgtagaagatccaaaatcc
ttaaatttcgctgcatgctgggctattgctcaaatctcaataacaacaagcggaatggta
tgctatcctttggatacagtacgacgcagtatgatgatgcaatcgggtaaacaaattaaa
caatatacgagtacaaaagactgctggaaaacgctttataaaaaagatggtatcaatgga
ttttatcgcggtgccctgacaaattcgctccggtctacaggtggag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CTCAATTTTGCTTTCCGTGACATTT 74 227 280 Antisense
GGTACATTTGTTTCGGGTGGTCTTG 605 501 364 Antisense
GGGTGGTCTTGGTGGAGCAACTACT 625 495 378 Antisense
CAACTACTTTATTCATGCTTTATCC 194 189 395 Antisense
GAACCAGACTGGCGTTAGACGTCAA 198 319 434 Antisense
GCCAGCGAAGGAGTTGCCTCGTGGT 696 275 514 Antisense
GGATTATCATCAGCTCTTCAGTTTG 372 509 544 Antisense
TTCAGTTTGTGATAGCTTCTCGAGC 428 687 560 Antisense
AATCCTTAAATTTCGCTGCATGCTG 412 167 635 Antisense
TATCGCGGTGCCCTGACAAATTCGC 363 657 823 Antisense
AATTCGCTCCGGTCTACAGGTGGAG 171 173 841 Antisense
Sequence Source Affymetrix Proprietary Database