[Home] | [Total List]

[190559_at] Probable rabGAP domains

Description F45E6.3 /REP_DB=WormBase Gene ID /WP=CE17829 /TR=Q20436 /GB=CAA92181.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation /DEF=Probable rabGAP domains
Cluster 6grp_total > 24      4grp_total > 11      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 146
1 2 3 4 range
A 52.3
(-1.5)
A 		63.2
(0.7)
A 		45.1
(-3)
A 		74.8
(3)
A 		30
B 16.3
(1.1)
A 		19.6
(2.3)
A 		4.6
(-3)
A 		21.7
(3)
A 		17
C 18.7
(-2.7)
A 		25.7
(-2.4)
A 		12.7
(-3)
A 		150.8
(3)
P 		138
avr 29.1
(-2.2) 		36.2
(-1.5) 		20.8
(-3) 		82.4
(3) 		62

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 84
1 2 3 4 5 6 range
A 86.7
(3)
A 		20.7
(-2)
A 		54.8
(0.6)
A 		19
(-2.1)
A 		7.3
(-3)
A 		14
(-2.5)
A 		79
B 18.6
(0.7)
A 		28.8
(3)
A 		12.5
(-0.7)
A 		2.7
(-3)
A 		8
(-1.8)
A 		5.9
(-2.3)
A 		26
C 18.4
(-1.6)
A 		65.1
(3)
A 		13.8
(-2.1)
A 		9.5
(-2.5)
A 		4.5
(-3)
A 		7.9
(-2.7)
A 		61
avr 41.2
(3) 		38.2
(2.5) 		27
(0.5) 		10.4
(-2.3) 		6.6
(-3) 		9.3
(-2.5) 		35
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 24
1 2 3 4 range
A 19
(3)
A 		13.7
(-1)
A 		11.8
(-2.4)
A 		11
(-3)
A 		8
B 5.2
(3)
A 		4.8
(2.4)
A 		1.1
(-3)
A 		4.6
(2.1)
A 		4
C 6.2
(-2.5)
A 		7.4
(-2.1)
A 		4.4
(-3)
A 		25.4
(3)
P 		21
avr 10.1
(0.3) 		8.6
(-0.9) 		5.8
(-3) 		13.7
(3) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 19
1 2 3 4 5 6 range
A 16
(3)
A 		7.4
(-0.7)
A 		11.9
(1.2)
A 		4.8
(-1.9)
A 		2.2
(-3)
A 		3.4
(-2.5)
A 		14
B 6.5
(0.9)
A 		9.6
(3)
A 		3
(-1.4)
A 		0.7
(-3)
A 		3.3
(-1.2)
A 		2.2
(-2)
A 		9
C 6.8
(-1.3)
A 		19.9
(3)
A 		3.5
(-2.3)
A 		1.9
(-2.9)
A 		1.5
(-3)
A 		2.7
(-2.6)
A 		18
avr 9.8
(1.5) 		12.3
(3) 		6.1
(-0.7) 		2.5
(-2.9) 		2.3
(-3) 		2.8
(-2.7) 		10
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 190559_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16192
Sequence Type Exemplar sequence
Representative Public ID F45E6.3 NCBI
Target Description F45E6.3 /REP_DB=WormBase Gene ID /WP=CE17829 /TR=Q20436 /GB=CAA92181.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation /DEF=Probable rabGAP domains
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077694(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077694 NCBI Caenorhabditis elegans F45E6.3 (F45E6.3) mRNA, complete cds. 10/11 None
F45E6.3 ENSEMBL cdna:known chromosome:CEL140:X:12484975:12491064:1 gene:F45E6.3 10/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000017831 8/11 Cross Hyb Matching Probes None
SNAP00000017824 3/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:12484974-12490699(+) 100.0 100.0
Public Domain and Genome References
Gene Title Probable rabGAP domains
Ensembl F45E6.3
Entrez Gene 181406 Entrez gene
SwissProt Q20436 EMBL-EBI
WormBase CE34021 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATH1-121501:254730_AT RabGAP/TBC domain-containing protein at
CANINE_2:CFAAFFX.30666.1.S1_AT similar to TBC1 domain family, member 13 cfa
CANINE_2:CFAAFFX.30667.1.S1_S_AT similar to TBC1 domain family, member 13 cfa
DROSOPHILA_2:1640561_AT dm
DROSGENOME1:154257_AT dm
CHICKEN:GGA.6307.1.S1_AT TBC1 domain family, member 13 gga
CHICKEN:GGA.9963.1.S1_AT TBC1 domain family, member 13 gga
CHICKEN:GGAAFFX.26269.1.A1_AT TBC1 domain family, member 13 gga
CHICKEN:GGAAFFX.26271.1.S1_AT TBC1 domain family, member 13 gga
HU35KSUBA:H13458_S_AT TBC1 domain family, member 13 hs
HG-U133A:218596_AT TBC1 domain family, member 13 hs
HG-U133_PLUS_2:218596_AT TBC1 domain family, member 13 hs
HG-U133A_2:218596_AT TBC1 domain family, member 13 hs
U133_X3P:G8922634_3P_S_AT TBC1 domain family, member 13 hs
U133_X3P:G8922634_3P_AT TBC1 domain family, member 13 hs
U133_X3P:218596_3P_AT TBC1 domain family, member 13 hs
HG-U133A_2:44696_AT TBC1 domain family, member 13 hs
HG-U133_PLUS_2:44696_AT TBC1 domain family, member 13 hs
HG-U133A:44696_AT TBC1 domain family, member 13 hs
HG-U95B:44696_AT TBC1 domain family, member 13 hs
MOUSE430_2:1424082_AT TBC1 domain family, member 13 mm
MOE430A:1424082_AT TBC1 domain family, member 13 mm
MOUSE430A_2:1424082_AT TBC1 domain family, member 13 mm
MG-U74BV2:115444_AT TBC1 domain family, member 13 mm
MG-U74BV2:110125_AT TBC1 domain family, member 13 (Tbc1d13), mRNA mm
MOE430B:1442717_AT TBC1 domain family, member 13 (Tbc1d13), mRNA mm
MOUSE430_2:1442717_AT TBC1 domain family, member 13 (Tbc1d13), mRNA mm
MU19KSUBA:TC14956_AT TBC1 domain family, member 13 (Tbc1d13), mRNA mm
MU19KSUBB:TC33725_AT TBC1 domain family, member 13 (Tbc1d13), mRNA mm
Protein Similarities
Method ID Description E-Value
blast CAA92181 Hypothetical protein F45E6.3 [Caenorhabditis elegans] ref|NP_510095.2| F45E6.3 [Caenorhabditis elegans] 0.0
blast CAE57239 Hypothetical protein CBG00117 [Caenorhabditis briggsae] 0.0
blast XP_520299 PREDICTED: similar to TBC1 domain family, member 13 [Pan troglodytes] 2.0E-82
Sequence
Target Sequence 
>C. ELEGANS:190559_AT
cacacgcttgcaaatcttctcatgaatgtttttttcagtgattattttttttgcgcaaaa
aagtttcgcacaaacatcgataacatcaaatcgagcatgtcagcttttcataatttgatc
tcaacttttgatacggagcttcacaagcatctcacactgacactggaaattaaaccacag
ttctacgctttccgctggctttcgttgcttctcagccaggagtttccacttccagacgtc
atcaccctttgggatgctcttttctccgatcctcaacgatttgcccttcttcagtacgtg
tgccttgcgatgatggaattgaaacgcgagcctctgatcaacggagacttcccattttgt
gtgcggcttctacagaactatcccgacaccgatattgcaaaaatcgtcgcatttgcgcag
gacattcgagatggaaaagccttgcgcccaatagccaaggaaatatcgaaagggagcaag
atcgcaaggcatgctcggcaac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CACACGCTTGCAAATCTTCTCATGA 576 195 925 Antisense
TTCACAAGCATCTCACACTGACACT 270 687 1064 Antisense
CTGGCTTTCGTTGCTTCTCAGCCAG 454 241 1119 Antisense
ATCACCCTTTGGGATGCTCTTTTCT 105 29 1165 Antisense
TCTTCAGTACGTGTGCCTTGCGATG 211 617 1212 Antisense
GAGCCTCTGATCAACGGAGACTTCC 557 385 1252 Antisense
CCATTTTGTGTGCGGCTTCTACAGA 183 271 1276 Antisense
GAACTATCCCGACACCGATATTGCA 159 349 1299 Antisense
GTCGCATTTGCGCAGGACATTCGAG 5 475 1330 Antisense
GATGGAAAAGCCTTGCGCCCAATAG 497 407 1354 Antisense
AAGATCGCAAGGCATGCTCGGCAAC 385 155 1402 Antisense
Sequence Source Affymetrix Proprietary Database