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[190558_s_at] Lectin C-type domain

Description Y18D10A.12 /REP_DB=WormBase Gene ID /WP=CE21408 /TR=Q9XW11 /GB=CAA22323.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=Lectin C-type domain
Cluster 6grp_total > 73      4grp_total > 50      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 8
1 2 3 4 range
A 4.2
(-2)
A 		6.1
(3)
A 		5
(0.1)
A 		3.8
(-3)
A 		2
B 7.1
(1.5)
A 		6.4
(0.6)
A 		8.4
(3)
A 		3.3
(-3)
A 		5
C 5.5
(-3)
A 		11.3
(3)
A 		5.7
(-2.8)
A 		6.6
(-1.9)
A 		6
avr 5.6
(-1.2) 		7.9
(3) 		6.4
(0.3) 		4.6
(-3) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 12
1 2 3 4 5 6 range
A 5
(-1.5)
A 		3.4
(-3)
A 		9
(2.3)
A 		3.4
(-3)
A 		9.7
(3)
A 		7
(0.4)
A 		6
B 2.6
(-3)
A 		3.3
(-1.5)
A 		2.6
(-3)
A 		4.9
(1.9)
A 		5.4
(3)
A 		5.3
(2.8)
A 		3
C 7.1
(-1.2)
A 		3.8
(-3)
A 		14.7
(3)
A 		14
(2.6)
A 		12.2
(1.6)
A 		7.1
(-1.2)
A 		11
avr 4.9
(-1.5) 		3.5
(-3) 		8.8
(2.7) 		7.4
(1.2) 		9.1
(3) 		6.5
(0.2) 		6
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 3
1 2 3 4 range
A 1.5
(3)
A 		1.3
(1.7)
A 		1.3
(1.7)
A 		0.6
(-3)
A 		1
B 2.3
(3)
A 		1.6
(0.4)
A 		1.9
(1.5)
A 		0.7
(-3)
A 		2
C 1.8
(-1)
A 		3.2
(3)
A 		2
(-0.4)
A 		1.1
(-3)
A 		2
avr 1.9
(2.5) 		2
(3) 		1.7
(1.5) 		0.8
(-3) 		1

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 3
1 2 3 4 5 6 range
A 0.9
(-3)
A 		1.2
(-2.1)
A 		2
(0.3)
A 		0.9
(-3)
A 		2.9
(3)
A 		1.7
(-0.6)
A 		2
B 0.9
(-1.9)
A 		1.1
(-1.1)
A 		0.6
(-3)
A 		1.3
(-0.4)
A 		2.2
(3)
A 		2
(2.3)
A 		2
C 2.6
(0)
A 		1.2
(-3)
A 		3.7
(2.4)
A 		2.8
(0.4)
A 		4
(3)
A 		2.4
(-0.4)
A 		3
avr 1.5
(-2) 		1.2
(-3) 		2.1
(0) 		1.7
(-1.3) 		3
(3) 		2
(-0.3) 		2
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 190558_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.751
Sequence Type Exemplar sequence
Representative Public ID Y18D10A.12 NCBI
Target Description Y18D10A.12 /REP_DB=WormBase Gene ID /WP=CE21408 /TR=Q9XW11 /GB=CAA22323.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=Lectin C-type domain
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060849(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060849 NCBI Caenorhabditis elegans Y18D10A.12 (Y18D10A.12) mRNA, complete cds. 11/11 None
GENEFINDER00000000454 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:12872351:12875017:-1 11/11 None
SNAP00000000419 ENSEMBL cdna:SNAP chromosome:CEL140:I:12874241:12875017:-1 11/11 None
Y18D10A.12 ENSEMBL cdna:known chromosome:CEL140:I:12874241:12875017:-1 gene:Y18D10A.12 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:12874171-12874948(-) 100.0 100.0
Public Domain and Genome References
Gene Title Lectin C-type domain
Ensembl Y18D10A.12
Entrez Gene 173154 Entrez gene
SwissProt Q9XW11 EMBL-EBI
WormBase CE21408 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
5529 sugar binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA22323 Hypothetical protein Y18D10A.12 [Caenorhabditis elegans] ref|NP_493250.1| Y18D10A.12 [Caenorhabditis elegans] 1.0E-105
blast CAA22323 Hypothetical protein Y18D10A.12 [Caenorhabditis elegans] ref|NP_493250.1| Y18D10A.12 [Caenorhabditis elegans] 1.0E-102
blast CAE17978 Hypothetical protein Y18D10A.24 [Caenorhabditis elegans] ref|NP_001021724.1| Y18D10A.24 [Caenorhabditis elegans] 1.0E-100
blast CAA22313 Hypothetical protein Y18D10A.10 [Caenorhabditis elegans] ref|NP_493248.1| Y18D10A.10 [Caenorhabditis elegans] 7.0E-58
blast CAA22313 Hypothetical protein Y18D10A.10 [Caenorhabditis elegans] ref|NP_493248.1| Y18D10A.10 [Caenorhabditis elegans] 6.0E-56
blast CAE17978 Hypothetical protein Y18D10A.24 [Caenorhabditis elegans] ref|NP_001021724.1| Y18D10A.24 [Caenorhabditis elegans] 5.0E-43
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_493250.1 1 4-21
Y18D10A.12 1 4-21
SNAP00000000419 1 4-21
Sequence
Target Sequence 
>C. ELEGANS:190558_S_AT
ttataagtcatactcctcgttttcctcatcatcgtcctccgaggaagattaccatcacgg
aagaccaccacattccccacgcccacctcgtccacaaccagtgcagcctcgcccagaatg
tgaaagtggctggacatcatacaataggccgcaggggacatcgtgcatcaaggtcttcta
cgcctcaacatctcaaagtacagctgaatcgctctgcagatcgataggcgctgcattgac
cggatatcaaaattcgaacgagagaatgcaggtttcatatgccttccgcgatatcataaa
ccaaaacggaggaggaacagccgaggtatgggttggcggaagaagaaaagctcagtgccc
gaatcgtaacgcctgtgccccactggacacttttgaatggatcgatggacacacaactgg
aacggatgggttccattgggcaaatactgagccgaatgcgaataatgggccgtattgttt
gcaaatgataattcatccgacttccgacacggctggcgcgaaatatggct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTATAAGTCATACTCCTCGTTTTCC 570 679 90 Antisense
GATTACCATCACGGAAGACCACCAC 435 429 136 Antisense
CAGCCTCGCCCAGAATGTGAAAGTG 193 203 193 Antisense
GCTGGACATCATACAATAGGCCGCA 365 295 218 Antisense
ATCGTGCATCAAGGTCTTCTACGCC 547 35 249 Antisense
TTCTACGCCTCAACATCTCAAAGTA 350 691 265 Antisense
GTACAGCTGAATCGCTCTGCAGATC 628 459 287 Antisense
AGATCGATAGGCGCTGCATTGACCG 631 61 307 Antisense
TGCCTTCCGCGATATCATAAACCAA 10 587 369 Antisense
TGATAATTCATCCGACTTCCGACAC 214 565 575 Antisense
GACACGGCTGGCGCGAAATATGGCT 505 367 595 Antisense
Sequence Source Affymetrix Proprietary Database