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[190557_s_at] histone binding protein

Description C50B6.2 /REP_DB=WormBase Gene ID /WP=CE08871 /TR=O17687 /GB=CAB02850.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=histone binding protein
Cluster 6grp_highest_10_10 > 97      6grp_high1_10_10 > 88      4grp_highest_8_8 > 0      4grp_high_8_8 > 44      6grp_highest_nonorm > 99      6grp_total > 89      4grp_total > 51      6grp_highest_sub > Cu      6grp_high1_sub > Da      6grp_rule_based > S6      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 470
1 2 3 4 range
A 481.5
(-0.7)
P 		615.5
(3)
P 		486.1
(-0.6)
P 		399.4
(-3)
P 		216
B 463.7
(-0.2)
P 		715.8
(3)
P 		494.7
(0.2)
P 		246.1
(-3)
P 		470
C 534.2
(0.3)
P 		710.1
(3)
P 		506.7
(-0.1)
P 		319.6
(-3)
P 		391
avr 493.1
(-0.1) 		680.5
(3) 		495.8
(-0.1) 		321.7
(-3) 		359

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2041
1 2 3 4 5 6 range
A 778.8
(-1.9)
P 		606.9
(-2.4)
P 		402.9
(-3)
P 		536.9
(-2.6)
P 		1409.4
(0)
P 		2392.8
(3)
P 		1990
B 741.6
(-1.6)
P 		548.1
(-2.3)
P 		352
(-3)
P 		605.7
(-2.1)
P 		1502.5
(1.1)
P 		2015.8
(3)
P 		1664
C 748.6
(-2)
P 		498.8
(-2.9)
P 		476.3
(-3)
P 		528.8
(-2.8)
P 		1469.4
(0.8)
P 		2043.4
(3)
P 		1567
avr 756.3
(-1.8) 		551.3
(-2.5) 		410.4
(-3) 		557.1
(-2.5) 		1460.4
(0.6) 		2150.7
(3) 		1740
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 152
1 2 3 4 range
A 175.3
(3)
P 		133.6
(0.9)
P 		127.1
(0.5)
P 		58.5
(-3)
P 		117
B 147.9
(1.6)
P 		176.8
(3)
P 		114.6
(-0)
P 		52.4
(-3)
P 		124
C 176.8
(1.9)
P 		204.2
(3)
P 		176.6
(1.9)
P 		53.9
(-3)
P 		150
avr 166.7
(2.8) 		171.5
(3) 		139.4
(1.3) 		54.9
(-3) 		117

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 666
1 2 3 4 5 6 range
A 143.6
(-2.3)
P 		215.8
(-1.4)
P 		87.8
(-3)
P 		136.2
(-2.4)
P 		425.3
(1.1)
P 		582.6
(3)
P 		495
B 258
(-1.4)
P 		182.4
(-2.1)
P 		85.5
(-3)
P 		160.4
(-2.3)
P 		610.4
(1.7)
P 		751.7
(3)
P 		666
C 277.5
(-1.2)
P 		152.2
(-2.5)
P 		121.2
(-2.8)
P 		106.3
(-3)
P 		475.5
(0.8)
P 		684
(3)
P 		578
avr 226.4
(-1.7) 		183.5
(-2.1) 		98.2
(-3) 		134.3
(-2.6) 		503.7
(1.2) 		672.8
(3) 		575
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 190557_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13726
Sequence Type Exemplar sequence
Representative Public ID C50B6.2 NCBI
Target Description C50B6.2 /REP_DB=WormBase Gene ID /WP=CE08871 /TR=O17687 /GB=CAB02850.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=histone binding protein
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073897(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073897 NCBI Caenorhabditis elegans C50B6.2 (C50B6.2) mRNA, complete cds. 11/11 None
SNAP00000011263 ENSEMBL cdna:SNAP chromosome:CEL140:V:13312939:13314837:-1 11/11 None
GENEFINDER00000011298 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:13312939:13314837:-1 11/11 None
C50B6.2.2 ENSEMBL cdna:known chromosome:CEL140:V:13312776:13314858:-1 gene:C50B6.2 11/11 None
C50B6.2.1 ENSEMBL cdna:known chromosome:CEL140:V:13312776:13314852:-1 gene:C50B6.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:13312938-13314837(-) 100.0 100.0
Public Domain and Genome References
Gene Title histone binding protein
Ensembl C50B6.2
Entrez Gene 179810 Entrez gene
SwissProt O17687 EMBL-EBI
WormBase CE08871 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE:1606014_AT similar to nuclear autoantigenic sperm protein isoform 3 cfa
CANINE:1605284_AT similar to nuclear autoantigenic sperm protein isoform 3 cfa
CANINE:1587912_AT similar to nuclear autoantigenic sperm protein isoform 3 cfa
CANINE_2:CFA.14927.1.A1_AT similar to nuclear autoantigenic sperm protein isoform 3 cfa
CANINE_2:CFA.19390.1.S1_S_AT similar to nuclear autoantigenic sperm protein isoform 3 cfa
CANINE_2:CFA.2896.1.S1_AT similar to nuclear autoantigenic sperm protein isoform 3 cfa
CANINE_2:CFAAFFX.7736.1.S1_S_AT similar to nuclear autoantigenic sperm protein isoform 3 cfa
CHICKEN:GGA.3820.1.S1_S_AT similar to Nuclear autoantigenic sperm protein (NASP) gga
CHICKEN:GGA.3820.3.S1_S_AT similar to Nuclear autoantigenic sperm protein (NASP) gga
HG-U133A:201970_S_AT nuclear autoantigenic sperm protein (histone-binding) hs
HG-U133_PLUS_2:201970_S_AT nuclear autoantigenic sperm protein (histone-binding) hs
HG-U133A_2:201970_S_AT nuclear autoantigenic sperm protein (histone-binding) hs
HUGENEFL:M97856_AT nuclear autoantigenic sperm protein (histone-binding) hs
U133_X3P:G4505332_3P_X_AT nuclear autoantigenic sperm protein (histone-binding) hs
U133_X3P:G4505332_3P_A_AT nuclear autoantigenic sperm protein (histone-binding) hs
U133_X3P:HS.243886.0.S2_3P_AT nuclear autoantigenic sperm protein (histone-binding) hs
HG-U133A_2:201969_AT nuclear autoantigenic sperm protein (histone-binding) hs
HG-FOCUS:201969_AT nuclear autoantigenic sperm protein (histone-binding) hs
HG-U133_PLUS_2:201969_AT nuclear autoantigenic sperm protein (histone-binding) hs
HG-U133A:201969_AT nuclear autoantigenic sperm protein (histone-binding) hs
HG-U95AV2:33255_AT nuclear autoantigenic sperm protein (histone-binding) hs
HG-U95E:88526_AT nuclear autoantigenic sperm protein (histone-binding) hs
HG-U95D:89123_AT nuclear autoantigenic sperm protein (histone-binding) hs
U133_X3P:HS.221750.0.A1_3P_AT Nuclear autoantigenic sperm protein (histone-binding) hs
U133_X3P:HS.131100.0.A1_3P_AT Nuclear autoantigenic sperm protein (histone-binding) hs
HG-U133_PLUS_2:237276_AT Nuclear autoantigenic sperm protein (histone-binding) hs
HG-U133B:237276_AT Nuclear autoantigenic sperm protein (histone-binding) hs
HG-U133_PLUS_2:242918_AT Nuclear autoantigenic sperm protein (histone-binding) hs
HG-U133B:242918_AT Nuclear autoantigenic sperm protein (histone-binding) hs
HG-U95D:72429_AT Nuclear autoantigenic sperm protein (histone-binding) hs
HG-U95E:82125_AT Nuclear autoantigenic sperm protein (histone-binding) hs
HG-U95C:58608_F_AT Nuclear autoantigenic sperm protein (histone-binding) hs
HG-U95C:58610_R_AT Nuclear autoantigenic sperm protein (histone-binding) hs
MOUSE430_2:1457113_AT nuclear autoantigenic sperm protein (histone-binding) mm
MOE430B:1457113_AT nuclear autoantigenic sperm protein (histone-binding) mm
MU11KSUBA:AF034610_S_AT nuclear autoantigenic sperm protein (histone-binding) mm
MU11KSUBB:MSA.13644.0_S_AT nuclear autoantigenic sperm protein (histone-binding) mm
MU11KSUBB:MSA.36419.0_S_AT nuclear autoantigenic sperm protein (histone-binding) mm
MU11KSUBB:MSA.24555.0_S_AT nuclear autoantigenic sperm protein (histone-binding) mm
MG-U74AV2:101108_AT nuclear autoantigenic sperm protein (histone-binding) mm
MG-U74CV2:136587_AT nuclear autoantigenic sperm protein (histone-binding) mm
MOE430A:1416043_AT nuclear autoantigenic sperm protein (histone-binding) mm
MOUSE430A_2:1416043_AT nuclear autoantigenic sperm protein (histone-binding) mm
MOUSE430_2:1416043_AT nuclear autoantigenic sperm protein (histone-binding) mm
MOE430A:1416042_S_AT nuclear autoantigenic sperm protein (histone-binding) mm
MOUSE430A_2:1416042_S_AT nuclear autoantigenic sperm protein (histone-binding) mm
MOUSE430_2:1416042_S_AT nuclear autoantigenic sperm protein (histone-binding) mm
MOE430B:1440328_AT nuclear autoantigenic sperm protein (histone-binding) mm
MOUSE430_2:1440328_AT nuclear autoantigenic sperm protein (histone-binding) mm
MOE430B:1442728_AT Nuclear autoantigenic sperm protein (histone-binding), mRNA (cDNA clone MGC:5829 IMAGE:3498591) mm
MOUSE430_2:1442728_AT Nuclear autoantigenic sperm protein (histone-binding), mRNA (cDNA clone MGC:5829 IMAGE:3498591) mm
MOUSE430_2:1444583_AT Nuclear autoantigenic sperm protein (histone-binding), mRNA (cDNA clone MGC:5829 IMAGE:3498591) mm
MOE430B:1444583_AT Nuclear autoantigenic sperm protein (histone-binding), mRNA (cDNA clone MGC:5829 IMAGE:3498591) mm
MU19KSUBA:TC16970_S_AT Nuclear autoantigenic sperm protein (histone-binding), mRNA (cDNA clone MGC:5829 IMAGE:3498591) mm
MU19KSUBA:TC21647_S_AT Nuclear autoantigenic sperm protein (histone-binding), mRNA (cDNA clone MGC:5829 IMAGE:3498591) mm
RAE230A:1377299_AT nuclear autoantigenic sperm protein rn
RAT230_2:1377299_AT nuclear autoantigenic sperm protein rn
RAE230B:1378264_AT Nuclear autoantigenic sperm protein rn
RAT230_2:1378264_AT Nuclear autoantigenic sperm protein rn
Protein Similarities
Method ID Description E-Value
blast CAB02850 Hypothetical protein C50B6.2 [Caenorhabditis elegans] ref|NP_506298.1| C50B6.2 [Caenorhabditis elegans] 0.0
blast CAE72248 Hypothetical protein CBG19366 [Caenorhabditis briggsae] 1.0E-144
Sequence
Target Sequence 
>C. ELEGANS:190557_S_AT
gaagttgaatctcgccgatgtcctcacttctctcggagagcatggaattgctgattccaa
gtatgaacaagcacaaaaagatttaaccgaagctatttcgatccaaacggtgcatcttcc
agcaacttctcgtgttattgcaaacacaactcatcttctggctaaggccttcagctcgga
ctcgttattcgaacaggctgcagctcacttcaatgatactaagaatatccttattgccaa
gtcggaggagttgaagaagcagttggagactgtctcggacgacgcgaagagtgatattca
gtctgaaatcaaggagttggacgggatcattccagaacttgatgctttcatcgttgatgc
tcgtgcctctgctgaacaaaccgaaaagttgaaatcagatgccaagaaagaactcgaagg
agctgctgctatgcttgccaaggttgctgatgtaactgaagctactgacatcagcagtat
ggttcgtcgtccaactaagcggccagcttccgaggaggctccagaggaaaccaaaaagcg
caaatcgggagatggagtcgacgttgctgtcgtcac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAAGTTGAATCTCGCCGATGTCCTC 484 337 1134 Antisense
TTCGATCCAAACGGTGCATCTTCCA 261 695 1230 Antisense
TCTTCCAGCAACTTCTCGTGTTATT 94 619 1248 Antisense
TGCAAACACAACTCATCTTCTGGCT 364 575 1272 Antisense
TCTTCTGGCTAAGGCCTTCAGCTCG 390 617 1287 Antisense
TTCAGCTCGGACTCGTTATTCGAAC 69 689 1303 Antisense
GGCTGCAGCTCACTTCAATGATACT 116 541 1329 Antisense
GACTGTCTCGGACGACGCGAAGAGT 68 375 1401 Antisense
TGCTTTCATCGTTGATGCTCGTGCC 710 579 1476 Antisense
AGTATGGTTCGTCGTCCAACTAAGC 274 63 1609 Antisense
ATGGAGTCGACGTTGCTGTCGTCAC 566 51 1685 Antisense
Sequence Source Affymetrix Proprietary Database