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[190556_s_at]

Description C44B12.7 /REP_DB=WormBase Gene ID /WP=CE16923 /TR=O44147 /GB=AAB88330.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation /DEF=reverse transcriptase
Cluster 6grp_total > 40      4grp_total > 10      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 295
1 2 3 4 range
A 70
(-1.6)
A 		69
(-1.7)
A 		48.8
(-3)
A 		139.2
(3)
P 		90
B 88.1
(0.3)
A 		45.3
(-3)
A 		56.8
(-2.1)
A 		123.5
(3)
P 		78
C 12.7
(-3)
A 		122.7
(-0.8)
A 		60
(-2)
A 		307.2
(3)
P 		295
avr 56.9
(-2.9) 		79
(-1.9) 		55.2
(-3) 		190
(3) 		135

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 120
1 2 3 4 5 6 range
A 91.3
(3)
A 		28.9
(-3)
A 		76.1
(1.5)
P 		86.6
(2.5)
A 		64.2
(0.4)
A 		84.1
(2.3)
A 		62
B 49.7
(0.6)
A 		49.3
(0.6)
A 		67.9
(3)
A 		62.2
(2.3)
A 		39.9
(-0.7)
A 		21.9
(-3)
A 		46
C 51.7
(-1.7)
A 		141.8
(3)
P 		65.1
(-1)
A 		65.2
(-1)
A 		27
(-3)
A 		61.6
(-1.2)
A 		115
avr 64.2
(1.2) 		73.3
(3) 		69.7
(2.3) 		71.3
(2.6) 		43.7
(-3) 		55.9
(-0.5) 		30
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 48
1 2 3 4 range
A 25.5
(3)
A 		15
(-2)
A 		12.8
(-3)
A 		20.4
(0.6)
P 		13
B 28.1
(3)
A 		11.2
(-3)
A 		13.2
(-2.3)
A 		26.3
(2.4)
P 		17
C 4.2
(-3)
A 		35.3
(0.9)
A 		20.9
(-0.9)
A 		51.8
(3)
P 		48
avr 19.3
(-1.7) 		20.5
(-1.3) 		15.6
(-3) 		32.8
(3) 		17

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 35
1 2 3 4 5 6 range
A 16.8
(0.3)
A 		10.3
(-3)
A 		16.6
(0.2)
P 		22
(3)
A 		19.4
(1.7)
A 		20.5
(2.2)
A 		12
B 17.3
(3)
A 		16.4
(2.4)
A 		16.5
(2.5)
A 		16.5
(2.5)
A 		16.2
(2.3)
A 		8.2
(-3)
A 		9
C 19.2
(-1.2)
A 		43.3
(3)
P 		16.6
(-1.6)
A 		13.1
(-2.2)
A 		8.7
(-3)
A 		20.6
(-0.9)
A 		35
avr 17.8
(-0.9) 		23.3
(3) 		16.6
(-1.7) 		17.2
(-1.3) 		14.8
(-3) 		16.4
(-1.9) 		9
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 190556_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11200
Sequence Type Exemplar sequence
Representative Public ID C44B12.7 NCBI
Target Description C44B12.7 /REP_DB=WormBase Gene ID /WP=CE16923 /TR=O44147 /GB=AAB88330.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation /DEF=reverse transcriptase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_067643(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_067643 NCBI Caenorhabditis elegans C44B12.7 (C44B12.7) mRNA, complete cds. 11/11 A 
GENEFINDER00000000203 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:16638403:16646243:-1 11/11 None
C44B12.7 ENSEMBL cdna:known chromosome:CEL140:IV:1137502:1139061:-1 gene:C44B12.7 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
Y57G11B.4 5/11 Cross Hyb Matching Probes None
Y105C5A.2 5/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:4838647-4839477(-) 32.31 67.44
Public Domain and Genome References
Ensembl C44B12.7
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_500044 C44B12.7 [Caenorhabditis elegans] gb|AAB88330.1| Hypothetical protein C44B12.7 [Caenorhabditis elegans] 0.0
blast CAB63384 Hypothetical protein Y51H4A.13 [Caenorhabditis elegans] ref|NP_502970.1| Y51H4A.13 [Caenorhabditis elegans] 0.0
blast AAD12803 Hypothetical protein Y24D9B.1 [Caenorhabditis elegans] ref|NP_500540.2| Y24D9B.1 [Caenorhabditis elegans] 0.0
blast CAE74712 Hypothetical protein CBG22527 [Caenorhabditis briggsae] 1.0E-175
blast T20051 hypothetical protein C49A1.8 - Caenorhabditis elegans 2.0E-71
blast T21231 hypothetical protein F22B3.3 - Caenorhabditis elegans 6.0E-71
Protein Domains
Database ID Description E-Value
Pfam IPR000477 EMBL-EBI RNA-directed DNA polymerase (Reverse transcriptase) 2.9E-33
Pfam IPR000477 EMBL-EBI RNA-directed DNA polymerase (Reverse transcriptase) 5.8E-24
Sequence
Target Sequence 
>C. ELEGANS:190556_S_AT
tcaataatttgcctatatccccatctaatatagcccgtgatttgggaatccttactgatt
ctaaacttaccttcaaaccccacattaagaagatcgtttctctagcccttttacgttgca
agcaattattaaaatcatttaaatccttatgtcctgaattctattgcaatttattcaaaa
cctacattctccccctcatcgaatacggttctgccgtatattcccccaaaccctcttctt
ccctatcaactcttcttgaaaaaccactccgttggtactctcaaaaagtcctacaaaaat
tcaacgtatcctactctttatataatgaccgtctcaaatctctcaaccttcactctattc
ggcaccgccgattaaagtcaaaactcattctcctttacaaattttgttgcggtacctctt
tccttcgccgaaaagaaacattctttaaactatcaacttcttcgagacgtcctatgagaa
ttatttgtcacaatccctcatctaataacttcttctctgataccatatctttttggaatg
ccattacaaacaattgtgatacctttttatctcctattcatttt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCAATAATTTGCCTATATCCCCATC 670 633 563 Antisense
TAGCCCGTGATTTGGGAATCCTTAC 610 623 593 Antisense
TCTAGCCCTTTTACGTTGCAAGCAA 465 613 663 Antisense
CCCTCATCGAATACGGTTCTGCCGT 551 259 755 Antisense
TCTTCCCTATCAACTCTTCTTGAAA 641 617 799 Antisense
TAATGACCGTCTCAAATCTCTCAAC 280 637 885 Antisense
CACTCTATTCGGCACCGCCGATTAA 628 197 913 Antisense
AAGTCAAAACTCATTCTCCTTTACA 326 157 937 Antisense
TACAAATTTTGTTGCGGTACCTCTT 499 641 958 Antisense
ATCAACTTCTTCGAGACGTCCTATG 664 25 1014 Antisense
TACCTTTTTATCTCCTATTCATTTT 701 647 1122 Antisense
Sequence Source Affymetrix Proprietary Database