[Home] | [Total List]

[190555_at]

Description C44B12.7 /REP_DB=WormBase Gene ID /WP=CE16923 /TR=O44147 /GB=AAB88330.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation /DEF=reverse transcriptase
Cluster 6grp_total > 80      4grp_total > 55      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 14
1 2 3 4 range
A 14.8
(3)
A 		6.8
(-3)
A 		9
(-1.4)
A 		8
(-2.1)
A 		8
B 16
(3)
A 		6
(-1.4)
A 		6.9
(-1)
A 		2.3
(-3)
A 		14
C 2
(-3)
A 		4.3
(-0.7)
A 		3.9
(-1.1)
A 		7.9
(3)
A 		6
avr 10.9
(3) 		5.7
(-3) 		6.6
(-2) 		6.1
(-2.5) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 42
1 2 3 4 5 6 range
A 5.2
(-2.6)
A 		5.1
(-2.6)
A 		2.4
(-3)
A 		43
(3)
A 		4.4
(-2.7)
A 		4.2
(-2.7)
A 		41
B 3.5
(-2.5)
A 		20.7
(2.8)
A 		1.8
(-3)
A 		21.4
(3)
A 		3.1
(-2.6)
A 		5.4
(-1.9)
A 		20
C 1.7
(-2.9)
A 		13.9
(3)
A 		9.2
(0.7)
A 		8.7
(0.5)
A 		1.4
(-3)
A 		1.7
(-2.9)
A 		13
avr 3.5
(-2.9) 		13.2
(-0.1) 		4.5
(-2.6) 		24.4
(3) 		3
(-3) 		3.8
(-2.8) 		21
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 5
1 2 3 4 range
A 5.4
(3)
A 		1.5
(-2.6)
A 		2.4
(-1.3)
A 		1.2
(-3)
A 		4
B 5.1
(3)
A 		1.5
(-1.7)
A 		1.6
(-1.6)
A 		0.5
(-3)
A 		5
C 0.7
(-3)
A 		1.2
(2)
A 		1.3
(3)
A 		1.3
(3)
A 		1
avr 3.7
(3) 		1.4
(-2.1) 		1.8
(-1.2) 		1
(-3) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 11
1 2 3 4 5 6 range
A 1
(-2.7)
A 		1.8
(-2.3)
A 		0.5
(-3)
A 		10.9
(3)
A 		1.3
(-2.5)
A 		1
(-2.7)
A 		10
B 1.2
(-2.3)
A 		6.9
(3)
A 		0.4
(-3)
A 		5.7
(1.9)
A 		1.3
(-2.2)
A 		2
(-1.5)
A 		7
C 0.6
(-2.8)
A 		4.2
(3)
A 		2.4
(0.1)
A 		1.8
(-0.9)
A 		0.5
(-3)
A 		0.6
(-2.8)
A 		4
avr 0.9
(-3) 		4.3
(0.9) 		1.1
(-2.8) 		6.1
(3) 		1
(-2.9) 		1.2
(-2.7) 		5
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 190555_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11200
Sequence Type Exemplar sequence
Representative Public ID C44B12.7 NCBI
Target Description C44B12.7 /REP_DB=WormBase Gene ID /WP=CE16923 /TR=O44147 /GB=AAB88330.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation /DEF=reverse transcriptase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_067643(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_067643 NCBI Caenorhabditis elegans C44B12.7 (C44B12.7) mRNA, complete cds. 11/11 A 
C44B12.7 ENSEMBL cdna:known chromosome:CEL140:IV:1137502:1139061:-1 gene:C44B12.7 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
Y57G11B.4 1/11 Cross Hyb Matching Probes None
Y105C5A.2 1/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:4838647-4839477(-) 32.31 67.44
Public Domain and Genome References
Ensembl C44B12.7
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_500044 C44B12.7 [Caenorhabditis elegans] gb|AAB88330.1| Hypothetical protein C44B12.7 [Caenorhabditis elegans] 0.0
blast T20051 hypothetical protein C49A1.8 - Caenorhabditis elegans 2.0E-71
blast T21231 hypothetical protein F22B3.3 - Caenorhabditis elegans 6.0E-71
Protein Domains
Database ID Description E-Value
Pfam IPR000477 EMBL-EBI RNA-directed DNA polymerase (Reverse transcriptase) 2.9E-33
Sequence
Target Sequence 
>C. ELEGANS:190555_AT
tatccccatctaatatagcccgtgatttgggaatccttactgattctaaacttaccttca
aaccccacattaagaagatcgtttctctagcccttttacgttgcaagcaattattaaaat
catttaaatccttatgtcctgaattctattgcaatttattcaaaacctacattctccccc
tcatcgaatacggttctgccgtatattcccccaaaccctcttcttccctatcaactcttc
ttgaaaaaccactccgttggtactctcaaaaagtcctacaaaaattcaacgtatcctact
ctttatataatgaccgtctcaaatctctcaaccttcactctattcggcaccgccgattaa
agtcaaaactcattctcctttacaaattttgttgcggtacctctttccttcgccgaaaag
aaacattctttaaactatcaacttcttcgagacgtcctatgagaattatttgtcacaatc
cctcatctaataacttcttct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TATCCCCATCTAATATAGCCCGTGA 49 659 578 Antisense
CCATCTAATATAGCCCGTGATTTGG 147 271 583 Antisense
TATGTCCTGAATTCTATTGCAATTT 179 655 710 Antisense
ACAAAAATTCAACGTATCCTACTCT 82 111 855 Antisense
AATTCAACGTATCCTACTCTTTATA 556 175 860 Antisense
AACGTATCCTACTCTTTATATAATG 663 143 865 Antisense
TTCCTTCGCCGAAAAGAAACATTCT 136 697 982 Antisense
GAATTATTTGTCACAATCCCTCATC 411 325 1040 Antisense
TTTGTCACAATCCCTCATCTAATAA 300 667 1046 Antisense
CACAATCCCTCATCTAATAACTTCT 207 195 1051 Antisense
AATCCCTCATCTAATAACTTCTTCT 235 169 1054 Antisense
Sequence Source Affymetrix Proprietary Database