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[190554_at] serine/threonine kinase

Description K09A9.1 /REP_DB=WormBase Gene ID /WP=CE11972 /TR=Q93872 /GB=CAB01883.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation /DEF=serine-threonine kinase
Cluster 6grp_highest_10_10 > 41      6grp_high1_10_10 > 15      4grp_highest_8_8 > 54      4grp_high_8_8 > 10      6grp_highest_nonorm > 11      6grp_total > 15      4grp_total > 22      6grp_highest_sub > De      6grp_high1_sub > De      6grp_total_sub > Decrease      6grp_rule_based > S1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1073
1 2 3 4 range
A 2571.7
(3)
P 		1559.8
(-3)
P 		1567
(-3)
P 		2484.3
(2.5)
P 		1012
B 2409.3
(2.8)
P 		1670.8
(-1.9)
P 		1498.3
(-3)
P 		2448.9
(3)
P 		951
C 2341.1
(2.6)
P 		1584.3
(-2.6)
P 		1532.7
(-3)
P 		2405.3
(3)
P 		873
avr 2440.7
(3) 		1605
(-2.5) 		1532.7
(-3) 		2446.2
(3) 		914

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1438
1 2 3 4 5 6 range
A 2415
(3)
P 		2320.7
(2.5)
P 		1249.6
(-3)
P 		1377.8
(-2.3)
P 		1279.6
(-2.8)
P 		1259.8
(-2.9)
P 		1165
B 2138.9
(3)
P 		1933.9
(1.9)
P 		1333.6
(-1.2)
P 		1455.8
(-0.5)
P 		1067.7
(-2.5)
P 		976.6
(-3)
P 		1162
C 2392.3
(3)
P 		1934.2
(0.8)
P 		1942.7
(0.8)
P 		1304.7
(-2.3)
P 		1160.2
(-3)
P 		1179
(-2.9)
P 		1232
avr 2315.4
(3) 		2062.9
(1.7) 		1508.6
(-1.1) 		1379.4
(-1.8) 		1169.2
(-2.8) 		1138.5
(-3) 		1177
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 598
1 2 3 4 range
A 936.4
(3)
P 		338.6
(-3)
P 		409.6
(-2.3)
P 		363.6
(-2.7)
P 		598
B 768.3
(3)
P 		412.6
(-2.1)
P 		347.2
(-3)
P 		521.9
(-0.5)
P 		421
C 775
(3)
P 		455.5
(-2.2)
P 		534.2
(-0.9)
P 		405.6
(-3)
P 		369
avr 826.6
(3) 		402.2
(-3) 		430.3
(-2.6) 		430.4
(-2.6) 		424

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 624
1 2 3 4 5 6 range
A 445.2
(-1.1)
P 		825.4
(3)
P 		272.1
(-3)
P 		349.4
(-2.2)
P 		386.1
(-1.8)
P 		306.7
(-2.6)
P 		553
B 744.2
(3)
P 		643.7
(1.6)
P 		323.8
(-3)
P 		385.6
(-2.1)
P 		433.8
(-1.4)
P 		364.2
(-2.4)
P 		420
C 886.7
(3)
P 		590.2
(0.2)
P 		494.4
(-0.8)
P 		262.4
(-3)
P 		375.4
(-1.9)
P 		394.7
(-1.7)
P 		624
avr 692
(3) 		686.4
(2.9) 		363.4
(-2.5) 		332.5
(-3) 		398.4
(-1.9) 		355.2
(-2.6) 		360
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 190554_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18047
Sequence Type Exemplar sequence
Representative Public ID K09A9.1 NCBI
Target Description K09A9.1 /REP_DB=WormBase Gene ID /WP=CE11972 /TR=Q93872 /GB=CAB01883.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation /DEF=serine-threonine kinase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_078172(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_078172 NCBI Caenorhabditis elegans K09A9.1 (K09A9.1) mRNA, complete cds. 11/11 None
SNAP00000037625 ENSEMBL cdna:SNAP chromosome:CEL140:X:15607890:15610137:1 11/11 None
GENEFINDER00000037629 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:15607890:15610137:1 11/11 None
K09A9.1 ENSEMBL cdna:known chromosome:CEL140:X:15607887:15611729:1 gene:K09A9.1 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:15606852-15610137(+) 100.0 100.0
Public Domain and Genome References
Gene Title serine/threonine kinase
Ensembl K09A9.1
Entrez Gene 181650 Entrez gene
SwissProt Q93872 EMBL-EBI
WormBase CE33670 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6468 protein amino acid phosphorylation inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4672 protein kinase activity inferred from electronic annotation QuickGO AmiGO
4674 protein serine/threonine kinase activity inferred from electronic annotation QuickGO AmiGO
5524 ATP binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB01883 Hypothetical protein K09A9.1 [Caenorhabditis elegans] ref|NP_510573.2| K09A9.1 [Caenorhabditis elegans] 0.0
blast CAE63334 Hypothetical protein CBG07734 [Caenorhabditis briggsae] 0.0
blast CAE63334 Hypothetical protein CBG07734 [Caenorhabditis briggsae] 1.0E-172
Protein Domains
Database ID Description E-Value
Pfam IPR000719 EMBL-EBI Protein kinase 4.7E-6
Pfam IPR000719 EMBL-EBI Protein kinase 4.7E-6
Sequence
Target Sequence 
>C. ELEGANS:190554_AT
aagcaccagcaacccgaatgaatctcgaagatctgtggaatcaagtgaatggagatttcc
cggaaattagatgtcgttccaacataatcctgaagaaacaggatatgattgtgaagatgg
acctgttcgagatgtactacaacacctataaagatcgacttcttccgaaaaacgtactcc
caatgtatgaagaaatgaaggcttgcagaaatgattcaacaattctcaccgaaatggcaa
agagagattttcgctcaattcaagagcagatgaaacgtcgaattgaaacgaaaccaactg
aatatcaaacattagtgatgcaagttcgcctgcaacagatcaaccaactattcttcgaga
aggaagtaagccaagcccaaaagcaacatcgtgctccaagactggtccaactgaaatgca
gtgatatatcgaaagagctactgcttcccggtgacatttacccaattagcgaacattatc
acccaagccagcagccagttgataaagtcgtctacaagcttctgtccgacgccaattcgc
tggcgtttccaactgttatgaaagggaccgttccgaaatcatatccacctccgg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAGCACCAGCAACCCGAATGAATCT 646 151 1469 Antisense
GATGGACCTGTTCGAGATGTACTAC 51 407 1584 Antisense
TCTTCCGAAAAACGTACTCCCAATG 291 615 1629 Antisense
GTTCGCCTGCAACAGATCAACCAAC 435 441 1792 Antisense
CAACATCGTGCTCCAAGACTGGTCC 621 187 1852 Antisense
ATCGAAAGAGCTACTGCTTCCCGGT 170 37 1896 Antisense
TTCCCGGTGACATTTACCCAATTAG 10 697 1913 Antisense
TTAGCGAACATTATCACCCAAGCCA 363 681 1934 Antisense
GTCGTCTACAAGCTTCTGTCCGACG 182 473 1975 Antisense
CAATTCGCTGGCGTTTCCAACTGTT 116 181 2001 Antisense
GTTCCGAAATCATATCCACCTCCGG 644 441 2038 Antisense
Sequence Source Affymetrix Proprietary Database