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[190552_at]

Description H02F09.4 /REP_DB=WormBase Gene ID /WP=CE19480 /TR=O76601 /GB=AAC64624.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation /DEF=reverse transcriptase
Cluster 6grp_total > 01      4grp_total > 18      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 72
1 2 3 4 range
A 27.6
(-3)
A 		56
(1.4)
A 		42.6
(-0.7)
A 		66.3
(3)
A 		39
B 55.3
(3)
A 		51.5
(1.7)
A 		37.8
(-3)
A 		40.6
(-2)
A 		18
C 45
(-2.7)
A 		50.2
(-2.2)
A 		42.6
(-3)
M 		99.1
(3)
P 		57
avr 42.6
(-2.7) 		52.6
(-0.5) 		41
(-3) 		68.7
(3) 		28

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 63
1 2 3 4 5 6 range
A 23.7
(-0.5)
P 		54.6
(3)
A 		2.3
(-3)
A 		42.8
(1.6)
A 		40.7
(1.4)
A 		25.3
(-0.4)
A 		52
B 18.6
(-3)
A 		50.5
(3)
M 		44.8
(1.9)
A 		21.4
(-2.5)
A 		38.1
(0.7)
A 		39.2
(0.9)
A 		32
C 61.6
(2.5)
A 		64.9
(3)
A 		49.6
(0.6)
A 		29.8
(-2.6)
A 		27.2
(-3)
A 		38.1
(-1.3)
A 		38
avr 34.6
(-2.2) 		56.7
(3) 		32.2
(-2.8) 		31.3
(-3) 		35.3
(-2.1) 		34.2
(-2.3) 		25
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 9
1 2 3 4 range
A 10.1
(-2)
A 		12.2
(3)
A 		11.1
(0.4)
A 		9.7
(-3)
A 		3
B 17.6
(3)
A 		12.7
(-0.3)
A 		8.7
(-3)
A 		8.7
(-3)
A 		9
C 14.9
(-1.7)
A 		14.4
(-3)
A 		14.9
(-1.7)
M 		16.7
(3)
P 		2
avr 14.2
(3) 		13.1
(0.5) 		11.6
(-3) 		11.7
(-2.8) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 22
1 2 3 4 5 6 range
A 4.4
(-1.8)
P 		19.4
(3)
A 		0.5
(-3)
A 		10.9
(0.3)
A 		12.3
(0.7)
A 		6.2
(-1.2)
A 		19
B 6.5
(-2.6)
A 		16.8
(3)
M 		10.9
(-0.2)
A 		5.7
(-3)
A 		15.5
(2.3)
A 		14.6
(1.8)
A 		11
C 22.8
(3)
A 		19.8
(1.9)
A 		12.6
(-0.6)
A 		6
(-3)
A 		8.8
(-2)
A 		12.8
(-0.6)
A 		17
avr 11.2
(-1) 		18.7
(3) 		8
(-2.7) 		7.5
(-3) 		12.2
(-0.5) 		11.2
(-1) 		11
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 190552_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18326
Sequence Type Exemplar sequence
Representative Public ID H02F09.4 NCBI
Target Description H02F09.4 /REP_DB=WormBase Gene ID /WP=CE19480 /TR=O76601 /GB=AAC64624.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation /DEF=reverse transcriptase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075893(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075893 NCBI Caenorhabditis elegans H02F09.4 (H02F09.4) mRNA, complete cds. 11/11 None
GENEFINDER00000039864 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:1561545:1563757:-1 11/11 None
H02F09.4 ENSEMBL cdna:known chromosome:CEL140:X:1562153:1565913:-1 gene:H02F09.4 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000039856 4/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Public Domain and Genome References
Ensembl H02F09.4
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_508294 H02F09.4 [Caenorhabditis elegans] 0.0
blast NP_510671 F38E9.3 [Caenorhabditis elegans] 0.0
blast T25005 hypothetical protein T19C9.7 - Caenorhabditis elegans 0.0
blast AAA21080 Hypothetical protein T07E3.1 [Caenorhabditis elegans] ref|NP_498506.1| T07E3.1 [Caenorhabditis elegans] 1.0E-178
Protein Domains
Database ID Description E-Value
Pfam IPR005135 EMBL-EBI Endonuclease/exonuclease/phosphatase 3.7E-25
Pfam IPR000477 EMBL-EBI RNA-directed DNA polymerase (Reverse transcriptase) 6.9E-78
Pfam IPR000477 EMBL-EBI RNA-directed DNA polymerase (Reverse transcriptase) 6.9E-78
Sequence
Target Sequence 
>C. ELEGANS:190552_AT
ttatatttctaactgtgctctcctggaatgcaagcagcttctcaaatcgtttcgttctac
aaatgcaaacctctacttcaagctattcaacgtctacgttcaaccattattgaactatgg
aagtgaagtcttcagtccaactgcaaaaagcctgataaagcaacttgaaatgccactcaa
attctactctagaagggtatttcaacgctgcaatatgcaatacacgtcatatgaagaccg
tcttgcccagatgaatcagaagtcagtccaacatctacgaattcttcagatacttcggac
tttccacaacattgtatctggagaataccacttcccaaatgtctcatccctgaagaaagc
acgatctccaagatttcctctcatgatgaaatcagttagacccgccgacaaaagcttcct
actggcaaacctggaaatatggaaccgcgttgcccaactgatccctgagaaaac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTATATTTCTAACTGTGCTCTCCTG 532 679 2898 Antisense
GCAAGCAGCTTCTCAAATCGTTTCG 123 321 2927 Antisense
AATGCAAACCTCTACTTCAAGCTAT 680 163 2959 Antisense
AATGCCACTCAAATTCTACTCTAGA 252 167 3066 Antisense
GTCAGTCCAACATCTACGAATTCTT 294 463 3159 Antisense
TCTTCAGATACTTCGGACTTTCCAC 7 615 3180 Antisense
AGAATACCACTTCCCAAATGTCTCA 334 75 3219 Antisense
GATCTCCAAGATTTCCTCTCATGAT 302 419 3260 Antisense
AAAAGCTTCCTACTGGCAAACCTGG 80 133 3307 Antisense
AAATATGGAACCGCGTTGCCCAACT 499 1 3332 Antisense
TTGCCCAACTGATCCCTGAGAAAAC 83 699 3347 Antisense
Sequence Source Affymetrix Proprietary Database