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[190551_at] carboxypeptidase b like

Description W01A8.6 /REP_DB=WormBase Gene ID /WP=CE06536 /TR=Q23099 /GB=CAA95852.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=carboxypeptidase b like
Cluster 6grp_high1_10_10 > 91      6grp_total > 92      4grp_total > 57      6grp_high1_sub > 05      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 493
1 2 3 4 range
A 78.9
(-3)
P 		480.1
(3)
P 		476.5
(2.9)
P 		105
(-2.6)
A 		401
B 95.9
(-2.2)
P 		389.6
(1.4)
P 		519.1
(3)
P 		26.4
(-3)
A 		493
C 82.8
(-2.3)
P 		359.6
(1.5)
P 		469.7
(3)
P 		30.9
(-3)
A 		439
avr 85.9
(-2.6) 		409.8
(1.9) 		488.4
(3) 		54.1
(-3) 		434

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1284
1 2 3 4 5 6 range
A 84
(-3)
A 		492.8
(-0.6)
P 		332
(-1.6)
P 		855.4
(1.5)
P 		1118.1
(3)
P 		148.5
(-2.6)
P 		1034
B 65.6
(-3)
P 		430.9
(-1.3)
P 		391.2
(-1.5)
P 		668.4
(-0.2)
P 		1346.7
(3)
P 		186.6
(-2.4)
P 		1281
C 62.8
(-3)
P 		436.8
(-0.6)
P 		354
(-1.1)
P 		806.5
(1.8)
P 		990.1
(3)
P 		233.6
(-1.9)
P 		927
avr 70.8
(-3) 		453.5
(-0.9) 		359.1
(-1.4) 		776.8
(0.9) 		1151.6
(3) 		189.6
(-2.3) 		1081
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 159
1 2 3 4 range
A 28.7
(-2.3)
P 		104.2
(1.9)
P 		124.6
(3)
P 		15.4
(-3)
A 		109
B 30.6
(-1.7)
P 		96.2
(1.7)
P 		120.3
(3)
P 		5.6
(-3)
A 		115
C 27.4
(-2.2)
P 		103.4
(0.7)
P 		163.7
(3)
P 		5.2
(-3)
A 		159
avr 28.9
(-2) 		101.3
(1.4) 		136.2
(3) 		8.7
(-3) 		128

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 532
1 2 3 4 5 6 range
A 15.5
(-3)
A 		175.3
(-0)
P 		72.3
(-1.9)
P 		216.9
(0.8)
P 		337.4
(3)
P 		36.2
(-2.6)
P 		322
B 22.8
(-3)
P 		143.4
(-1.6)
P 		95
(-2.2)
P 		177
(-1.2)
P 		547.1
(3)
P 		69.6
(-2.5)
P 		524
C 23.3
(-3)
P 		133.3
(-0.8)
P 		90.1
(-1.7)
P 		162.2
(-0.2)
P 		320.4
(3)
P 		78.2
(-1.9)
P 		297
avr 20.5
(-3) 		150.7
(-1) 		85.8
(-2) 		185.4
(-0.4) 		401.6
(3) 		61.3
(-2.4) 		381
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 190551_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.884
Sequence Type Exemplar sequence
Representative Public ID W01A8.6 NCBI
Target Description W01A8.6 /REP_DB=WormBase Gene ID /WP=CE06536 /TR=Q23099 /GB=CAA95852.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=carboxypeptidase b like
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059602(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059602 NCBI Caenorhabditis elegans W01A8.6 (W01A8.6) mRNA, complete cds. 11/11 None
SNAP00000018613 ENSEMBL cdna:SNAP chromosome:CEL140:I:7078888:7080875:-1 11/11 None
GENEFINDER00000018618 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:7078888:7080875:-1 11/11 None
W01A8.6 ENSEMBL cdna:known chromosome:CEL140:I:7078888:7081529:-1 gene:W01A8.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:7078818-7081460(-) 100.0 100.0
Public Domain and Genome References
Gene Title carboxypeptidase b like
Ensembl W01A8.6
Entrez Gene 189076 Entrez gene
SwissProt Q23099 EMBL-EBI
WormBase CE06536 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6508 proteolysis inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4182 carboxypeptidase A activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA95852 Hypothetical protein W01A8.6 [Caenorhabditis elegans] ref|NP_492003.1| W01A8.6 [Caenorhabditis elegans] 0.0
blast CAE73102 Hypothetical protein CBG20482 [Caenorhabditis briggsae] 0.0
blast CAE63736 Hypothetical protein CBG08265 [Caenorhabditis briggsae] 6.0E-71
Protein Domains
Database ID Description E-Value
Pfam IPR000834 EMBL-EBI Peptidase M14, carboxypeptidase A 7.1E-39
Pfam IPR000834 EMBL-EBI Peptidase M14, carboxypeptidase A 1.3E-17
Pfam IPR000834 EMBL-EBI Peptidase M14, carboxypeptidase A 7.1E-39
Pfam IPR000834 EMBL-EBI Peptidase M14, carboxypeptidase A 1.3E-17
Sequence
Target Sequence 
>C. ELEGANS:190551_AT
tccattcaacaatccatgctcggacgagtttcagggtccccgaccattctctgagccaga
aacgagagccgtcagagatttcattatgtcgtctgaaatatacggaaggctttatgcact
tgtatcaatgcacactcacggccaactctggatattaccatataattatcaaaaaagaac
gtatcctcaagatatcaaggatctggaaattctggcaaacagagcagctgatcgcgtttt
cgcttatcgggagacaaaatatcgagttggaactgcagcagatatgcttggaacagcaac
tggaggagcaactgattggattaaaaagaatactccgacaaaatatgtctatgtactgga
attgccacctgatatgaaaacttggttcgcattccaagtcaaaccacattggcttattcc
aattggaaaagagacatggcttggaattgaagtaatattcgatcaggtagttgaggaaac
caagaactttcaaccgactgaaccaactacaaac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCCATTCAACAATCCATGCTCGGAC 568 591 576 Antisense
TGCTCGGACGAGTTTCAGGGTCCCC 285 579 592 Antisense
CCCGACCATTCTCTGAGCCAGAAAC 158 271 614 Antisense
GAGCCGTCAGAGATTTCATTATGTC 676 385 641 Antisense
GCACTTGTATCAATGCACACTCACG 243 317 691 Antisense
ACACTCACGGCCAACTCTGGATATT 243 111 707 Antisense
AACAGAGCAGCTGATCGCGTTTTCG 93 137 793 Antisense
TCGCGTTTTCGCTTATCGGGAGACA 85 599 807 Antisense
GTCTATGTACTGGAATTGCCACCTG 36 469 922 Antisense
GTTCGCATTCCAAGTCAAACCACAT 189 441 960 Antisense
TCAACCGACTGAACCAACTACAAAC 498 631 1065 Antisense
Sequence Source Affymetrix Proprietary Database