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[190549_at] glutathione peroxidase

Description F55A3.5 /REP_DB=WormBase Gene ID /WP=CE17114 /TR=Q9N5S2 /GB=AAF39836.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation /DEF=glutathione peroxidase
Cluster 6grp_total > 91      4grp_total > 44      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 57
1 2 3 4 range
A 31
(-0.8)
A 		65.1
(3)
A 		40.9
(0.3)
A 		11
(-3)
A 		54
B 48.1
(3)
A 		20.7
(-1.1)
A 		8.2
(-3)
A 		17.5
(-1.6)
A 		40
C 37
(-2.4)
A 		35.9
(-3)
A 		42.3
(0.7)
A 		46.3
(3)
A 		10
avr 38.7
(2.3) 		40.6
(3) 		30.5
(-0.9) 		24.9
(-3) 		16

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 43
1 2 3 4 5 6 range
A 48.4
(2.4)
A 		9.7
(-3)
A 		35.3
(0.6)
A 		34.7
(0.5)
A 		52.7
(3)
A 		25.6
(-0.8)
A 		43
B 28.6
(-0.6)
A 		34.4
(2.4)
A 		24
(-3)
A 		35.6
(3)
A 		34.3
(2.3)
A 		31.2
(0.7)
A 		12
C 40.4
(0.9)
A 		45.1
(1.9)
A 		44.9
(1.8)
A 		50.5
(3)
A 		39.3
(0.7)
A 		21.7
(-3)
A 		29
avr 39.1
(1.9) 		29.7
(-1.7) 		34.7
(0.2) 		40.3
(2.3) 		42.1
(3) 		26.2
(-3) 		16
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 14
1 2 3 4 range
A 11.3
(1.7)
A 		14.1
(3)
A 		10.7
(1.4)
A 		1.6
(-3)
A 		13
B 15.3
(3)
A 		5.1
(-1.6)
A 		1.9
(-3)
A 		3.7
(-2.2)
A 		13
C 12.2
(0.8)
A 		10.3
(-0.8)
A 		14.7
(3)
A 		7.8
(-3)
A 		7
avr 12.9
(3) 		9.8
(0.8) 		9.1
(0.3) 		4.4
(-3) 		9

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 12
1 2 3 4 5 6 range
A 8.9
(-0.4)
A 		3.5
(-3)
A 		7.7
(-1)
A 		8.8
(-0.4)
A 		15.9
(3)
A 		6.2
(-1.7)
A 		12
B 9.9
(0)
A 		11.5
(1.2)
A 		5.8
(-3)
A 		9.4
(-0.3)
A 		13.9
(3)
A 		11.6
(1.3)
A 		8
C 15
(3)
A 		13.8
(2.1)
A 		11.4
(0.2)
A 		10.2
(-0.7)
A 		12.7
(1.2)
A 		7.3
(-3)
A 		8
avr 11.3
(0.1) 		9.6
(-1.7) 		8.3
(-3) 		9.5
(-1.8) 		14.2
(3) 		8.4
(-2.9) 		6
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 190549_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.490
Sequence Type Exemplar sequence
Representative Public ID F55A3.5 NCBI
Target Description F55A3.5 /REP_DB=WormBase Gene ID /WP=CE17114 /TR=Q9N5S2 /GB=AAF39836.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation /DEF=glutathione peroxidase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060417(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060417 NCBI Caenorhabditis elegans F55A3.5 (F55A3.5) mRNA, complete cds. 11/11 None
GENEFINDER00000019268 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:10786700:10793102:-1 9/11 None
SNAP00000019259 ENSEMBL cdna:SNAP chromosome:CEL140:I:10790236:10793509:-1 9/11 None
F55A3.5 ENSEMBL cdna:known chromosome:CEL140:I:10789563:10791011:-1 gene:F55A3.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:10790166-10790942(-) 100.0 100.0
Public Domain and Genome References
Gene Title glutathione peroxidase
Ensembl F55A3.5
Entrez Gene 172983 Entrez gene
SwissProt Q9N5S2 EMBL-EBI
WormBase CE17114 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAF39836 Hypothetical protein F55A3.5 [Caenorhabditis elegans] ref|NP_492818.1| F55A3.5 [Caenorhabditis elegans] 7.0E-74
blast AAF39837 Hypothetical protein F55A3.6 [Caenorhabditis elegans] ref|NP_492819.1| F55A3.6 [Caenorhabditis elegans] 4.0E-61
blast AAF39836 Hypothetical protein F55A3.5 [Caenorhabditis elegans] ref|NP_492818.1| F55A3.5 [Caenorhabditis elegans] 6.0E-58
blast AAF39837 Hypothetical protein F55A3.6 [Caenorhabditis elegans] ref|NP_492819.1| F55A3.6 [Caenorhabditis elegans] 5.0E-52
blast AAF39836 Hypothetical protein F55A3.5 [Caenorhabditis elegans] ref|NP_492818.1| F55A3.5 [Caenorhabditis elegans] 2.0E-50
blast CAB05581 Hypothetical protein R05H10.5 [Caenorhabditis elegans] ref|NP_497078.1| R05H10.5 [Caenorhabditis elegans] sp|O62327|GPX2_CAEEL Probable glutathione peroxidase R05H10.5 1.0E-17
blast CAE73436 Hypothetical protein CBG20879 [Caenorhabditis briggsae] 3.0E-17
Protein Domains
Database ID Description E-Value
Pfam IPR000889 EMBL-EBI Glutathione peroxidase 2.0E-7
Pfam IPR001564 EMBL-EBI Nucleoside diphosphate kinase 4.7E-18
Pfam IPR000889 EMBL-EBI Glutathione peroxidase 2.0E-7
Pfam IPR001564 EMBL-EBI Nucleoside diphosphate kinase 4.0E-17
Pfam IPR000889 EMBL-EBI Glutathione peroxidase 3.6E-8
Sequence
Target Sequence 
>C. ELEGANS:190549_AT
atttttccgtatttttcagccgcagactattccatgactgctctttcgaaattctcgtct
tcccgtgcaatcaatccaataatgaggagtcgtcctgggagagtgatcttccctattttt
tcaaataccagccaaaaatctaccaaaaaatcgatgtgaacggagtaaacactgatcctt
tgtacaagttgttgaagaaagtgaatgtcgtgacactgggcgactctatcgggatattag
gcgattcgatctgttataactttacaaagttttttgttggtaaagacggacacgttatca
aacgattctgccgcaccaccttgccgaaggacaaatt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATTTTTCCGTATTTTTCAGCCGCAG 608 13 59 Antisense
TCAGCCGCAGACTATTCCATGACTG 133 625 74 Antisense
ATGACTGCTCTTTCGAAATTCTCGT 253 45 92 Antisense
GAGGAGTCGTCCTGGGAGAGTGATC 107 405 142 Antisense
GAGAGTGATCTTCCCTATTTTTTCA 35 397 157 Antisense
GGAGTAAACACTGATCCTTTGTACA 484 503 220 Antisense
GAATGTCGTGACACTGGGCGACTCT 635 331 261 Antisense
GGGCGACTCTATCGGGATATTAGGC 40 493 276 Antisense
GGCGATTCGATCTGTTATAACTTTA 515 539 298 Antisense
ACGTTATCAAACGATTCTGCCGCAC 205 95 350 Antisense
GCACCACCTTGCCGAAGGACAAATT 81 315 371 Antisense
Sequence Source Affymetrix Proprietary Database