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[190542_at] transpanin

Description B0563.2 /REP_DB=WormBase Gene ID /WP=CE28384 /GEN=tsp-11 /TR=Q17526 /GB=AAA68322.2 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation /DEF=transpanin
Cluster 6grp_highest_10_10 > 53      6grp_high1_10_10 > 34      4grp_high_8_8 > 29      6grp_highest_nonorm > 70      6grp_total > 01      4grp_total > 35      6grp_highest_sub > 02      6grp_cgc > 53      6grp_high1_sub > 02      6grp_cgc_sub > 02      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 218
1 2 3 4 range
A 207
(-0.8)
M 		347
(3)
P 		128.6
(-3)
P 		195
(-1.2)
P 		218
B 146.8
(-2.7)
P 		287
(3)
P 		139.5
(-3)
P 		256.7
(1.8)
P 		148
C 145.3
(-3)
M 		228.3
(-0.3)
P 		209.3
(-0.9)
P 		327.5
(3)
P 		182
avr 166.4
(-2.7) 		287.4
(3) 		159.1
(-3) 		259.7
(1.7) 		128

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 243
1 2 3 4 5 6 range
A 267.4
(-1.3)
P 		387.7
(3)
P 		240
(-2.2)
P 		217.9
(-3)
P 		322.7
(0.7)
P 		258.8
(-1.6)
P 		170
B 290.7
(-0.6)
P 		420
(3)
P 		269.1
(-1.1)
P 		201.7
(-3)
P 		310.1
(-0)
P 		273.3
(-1)
P 		218
C 316.4
(-0.4)
P 		444.6
(3)
P 		275.1
(-1.6)
P 		327
(-0.2)
P 		221.1
(-3)
P 		292.1
(-1.1)
P 		224
avr 291.5
(-1.5) 		417.4
(3) 		261.4
(-2.6) 		248.9
(-3) 		284.6
(-1.7) 		274.7
(-2.1) 		169
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 47
1 2 3 4 range
A 75.4
(3)
M 		75.3
(3)
P 		33.6
(-2.3)
P 		28.5
(-3)
P 		47
B 46.8
(-0.7)
P 		70.9
(3)
P 		32.3
(-3)
P 		54.7
(0.5)
P 		39
C 48.1
(-3)
M 		65.6
(1.2)
P 		72.9
(3)
P 		55.2
(-1.3)
P 		25
avr 56.8
(-0.4) 		70.6
(3) 		46.3
(-3) 		46.1
(-3) 		25

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 91
1 2 3 4 5 6 range
A 49.3
(-3)
P 		137.9
(3)
P 		52.3
(-2.8)
P 		55.3
(-2.6)
P 		97.4
(0.3)
P 		63
(-2.1)
P 		89
B 101.1
(0.3)
P 		139.8
(3)
P 		65.4
(-2.2)
P 		53.4
(-3)
P 		126
(2)
P 		101.9
(0.4)
P 		86
C 117.3
(1.4)
P 		135.7
(3)
P 		70
(-2.6)
P 		65.8
(-3)
P 		71.5
(-2.5)
P 		97.8
(-0.3)
P 		70
avr 89.2
(-0.7) 		137.8
(3) 		62.6
(-2.7) 		58.2
(-3) 		98.3
(0) 		87.6
(-0.8) 		80
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 190542_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17076
Sequence Type Exemplar sequence
Representative Public ID B0563.2 NCBI
Target Description B0563.2 /REP_DB=WormBase Gene ID /WP=CE28384 /GEN=tsp-11 /TR=Q17526 /GB=AAA68322.2 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation /DEF=transpanin
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077145(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077145 NCBI Caenorhabditis elegans B0563.2 (transpanin) mRNA, complete cds. 11/11 None
GENEFINDER00000037339 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:9163121:9165902:1 11/11 None
B0563.2 ENSEMBL cdna:known chromosome:CEL140:X:9163097:9165902:1 gene:B0563.2 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000037334 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:9163095-9165901(+) 100.0 100.0
Public Domain and Genome References
Gene Title transpanin
Gene Symbol tsp-11
Ensembl B0563.2
Entrez Gene 192064 Entrez gene
SwissProt Q17526 EMBL-EBI
WormBase CE35212 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
16021 integral to membrane inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAA68322 Tetraspanin family protein 11 [Caenorhabditis elegans] ref|NP_509546.2| B0563.2 [Caenorhabditis elegans] 1.0E-144
blast AAA68322 Tetraspanin family protein 11 [Caenorhabditis elegans] ref|NP_509546.2| B0563.2 [Caenorhabditis elegans] 1.0E-137
blast CAE57272 Hypothetical protein CBG00172 [Caenorhabditis briggsae] 1.0E-113
blast CAE57272 Hypothetical protein CBG00172 [Caenorhabditis briggsae] 1.0E-109
blast AAH88907 LOC496318 protein [Xenopus laevis] 1.0E-9
Protein Domains
Database ID Description E-Value
Pfam IPR000301 EMBL-EBI CD9/CD37/CD63 antigen 7.1E-31
Pfam IPR000301 EMBL-EBI CD9/CD37/CD63 antigen 6.6E-20
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_509546.2 4 21-43,82-104,111-133,250-272
B0563.2 4 21-43,82-104,111-133,250-272
GENEFINDER00000037339 4 13-35,74-96,103-125,254-276
Sequence
Target Sequence 
>C. ELEGANS:190542_AT
atttttggggtgttgtggtgctgctaaggaatggagaccacttttatgttgctactcatc
ctgtttaatgttaatacttgcaatacaaattgctgcaacaatatacgctttccttcacag
tcacatgtttgaaaacgactttcgagacattcttcattcgtcgttaaaaatgtacaatgg
aacggataacatgaaagtcagcaacaatcctcaagatggtttgttggtaaaaacagcatg
ggacaaaattatgattgagaaatcgtgttgcggagtagactccaaaattggagagttcaa
caattccggatggtatcagctgaaccatggacgctaccaatttccaccagcatgttgccc
acctgatgaacatggaagattaagaccatactgtaacacaatcatgagacattcccatgg
ttgtataacgccactttatcgtgaatcccagatacacttctcagccatattctcgattct
tgtcgtct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATTTTTGGGGTGTTGTGGTGCTGCT 390 15 264 Antisense
TGGAGACCACTTTTATGTTGCTACT 104 549 295 Antisense
ATGTTGCTACTCATCCTGTTTAATG 474 47 309 Antisense
AACAATATACGCTTTCCTTCACAGT 53 575 360 Antisense
ACGACTTTCGAGACATTCTTCATTC 372 93 398 Antisense
ATCAGCTGAACCATGGACGCTACCA 461 27 578 Antisense
AGCATGTTGCCCACCTGATGAACAT 43 79 612 Antisense
GACATTCCCATGGTTGTATAACGCC 413 371 671 Antisense
ACGCCACTTTATCGTGAATCCCAGA 146 91 691 Antisense
CAGATACACTTCTCAGCCATATTCT 35 207 712 Antisense
GCCATATTCTCGATTCTTGTCGTCT 607 281 727 Antisense
Sequence Source Affymetrix Proprietary Database