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[190541_at] Alcohol dehydrogenase

Description C30G12.2 /REP_DB=WormBase Gene ID /WP=CE25799 /TR=Q09486 /GB=AAC46671.2 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation /DEF=Alcohol dehydrogenase
Cluster 6grp_total > 46      4grp_total > 24      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 122
1 2 3 4 range
A 56.3
(-3)
A 		80.8
(-1.1)
P 		107.1
(0.9)
P 		133.7
(3)
P 		77
B 47.1
(-3)
A 		76.3
(-1.6)
P 		144.6
(1.8)
P 		168.1
(3)
P 		121
C 64.8
(-3)
M 		112
(-0.3)
P 		124.9
(0.5)
P 		168.8
(3)
P 		104
avr 56.1
(-3) 		89.7
(-1) 		125.5
(1.1) 		156.9
(3) 		101

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 70
1 2 3 4 5 6 range
A 10.4
(-2.6)
A 		31.8
(-0.4)
A 		64.2
(3)
A 		6.3
(-3)
A 		46.4
(1.2)
A 		53.1
(1.8)
A 		58
B 56.6
(1)
P 		76.2
(3)
A 		36.8
(-1.1)
A 		30.9
(-1.7)
A 		18.4
(-3)
A 		52.8
(0.6)
A 		58
C 59.7
(1.5)
M 		59.8
(1.5)
A 		43.5
(-0.3)
A 		23.8
(-2.4)
A 		18.5
(-3)
A 		73.3
(3)
P 		55
avr 42.2
(0.3) 		55.9
(2.4) 		48.2
(1.2) 		20.3
(-3) 		27.8
(-1.9) 		59.7
(3) 		39
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 29
1 2 3 4 range
A 20.5
(-1.3)
A 		17.5
(-3)
P 		28
(3)
P 		19.6
(-1.8)
P 		11
B 15
(-3)
A 		18.8
(-1.9)
P 		33.5
(2.3)
P 		35.8
(3)
P 		21
C 21.5
(-3)
M 		32.2
(-0.1)
P 		43.5
(3)
P 		28.5
(-1.1)
P 		22
avr 19
(-3) 		22.8
(-1.6) 		35
(3) 		28
(0.4) 		16

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 24
1 2 3 4 5 6 range
A 1.9
(-2.9)
A 		11.3
(1.7)
A 		14
(3)
A 		1.6
(-3)
A 		14
(3)
A 		12.9
(2.5)
A 		12
B 19.7
(1.1)
P 		25.4
(3)
A 		8.9
(-2.5)
A 		8.2
(-2.8)
A 		7.5
(-3)
A 		19.7
(1.1)
A 		18
C 22.1
(2.3)
M 		18.2
(1.1)
A 		11.1
(-1.1)
A 		4.8
(-3)
A 		6
(-2.6)
A 		24.5
(3)
P 		20
avr 14.6
(1.1) 		18.3
(2.7) 		11.3
(-0.3) 		4.9
(-3) 		9.2
(-1.2) 		19
(3) 		14
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 190541_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5058
Sequence Type Exemplar sequence
Representative Public ID C30G12.2 NCBI
Target Description C30G12.2 /REP_DB=WormBase Gene ID /WP=CE25799 /TR=Q09486 /GB=AAC46671.2 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation /DEF=Alcohol dehydrogenase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063119(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_063119 NCBI Caenorhabditis elegans C30G12.2 (C30G12.2) mRNA, complete cds. 11/11 None
SNAP00000038319 ENSEMBL cdna:SNAP chromosome:CEL140:II:7290357:7291650:1 11/11 None
GENEFINDER00000038323 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:7290390:7291650:1 11/11 None
C30G12.2 ENSEMBL cdna:known chromosome:CEL140:II:7290310:7291650:1 gene:C30G12.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:7290385-7291646(+) 100.0 100.0
Public Domain and Genome References
Gene Title Alcohol dehydrogenase
Ensembl C30G12.2
Entrez Gene 174195 Entrez gene
SwissProt Q09486 EMBL-EBI
WormBase CE25799 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CHICKEN:GGA.7456.1.S1_AT similar to CG10964-PA gga
CHICKEN:GGAAFFX.471.1.S1_S_AT similar to CG10964-PA gga
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
8152 metabolism inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
16491 oxidoreductase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAC46671 Hypothetical protein C30G12.2 [Caenorhabditis elegans] ref|NP_495520.1| C30G12.2 [Caenorhabditis elegans] 1.0E-148
blast CAE67586 Hypothetical protein CBG13128 [Caenorhabditis briggsae] 1.0E-127
blast CAE67586 Hypothetical protein CBG13128 [Caenorhabditis briggsae] 1.0E-121
blast CAB02087 Hypothetical protein F20G2.2 [Caenorhabditis elegans] ref|NP_506407.1| F20G2.2 [Caenorhabditis elegans] 3.0E-79
Protein Domains
Database ID Description E-Value
Pfam IPR002198 EMBL-EBI Short-chain dehydrogenase/reductase SDR 7.6E-15
Pfam IPR002198 EMBL-EBI Short-chain dehydrogenase/reductase SDR 7.6E-15
Sequence
Target Sequence 
>C. ELEGANS:190541_AT
gaagtatcttcacttgtatcatcaaatggacttaatatgcttatcaacaatgctggaata
cttcttccatatgaagtggatggtccaaagatctgtagaaaaacgatgatgaaacaattg
gaaactaattcagtgtctgttgcaattttaactcaaatattccttccattgatcaagaca
gctgcatcagctgcagaaggagatgaagcaagtattgatcgagcatctattattaacatt
tcatctacaatggcatcaattgaaatgaacaatggatgctttgatggtcctatgaccgca
taccgaatgagtaaatctgctctgaatgcatttgcgcgtcaatcattcatggaactatct
aaatatcatattcttgtcacttcattctgtccaggatgggtccgtactgatatgggaggt
gataatgctgatttggatgtcaatgaatcaactaaaacactttctgcaaacattcttcga
ctcg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAAGTATCTTCACTTGTATCATCAA 301 337 271 Antisense
CAGTGTCTGTTGCAATTTTAACTCA 660 207 401 Antisense
ATTCCTTCCATTGATCAAGACAGCT 669 7 429 Antisense
GGATGCTTTGATGGTCCTATGACCG 338 513 544 Antisense
GTCCTATGACCGCATACCGAATGAG 349 475 557 Antisense
ATCTGCTCTGAATGCATTTGCGCGT 167 33 585 Antisense
GCATTTGCGCGTCAATCATTCATGG 641 307 598 Antisense
AAATATCATATTCTTGTCACTTCAT 151 117 631 Antisense
TGTCACTTCATTCTGTCCAGGATGG 457 559 645 Antisense
TGTCCAGGATGGGTCCGTACTGATA 424 557 658 Antisense
CTTTCTGCAAACATTCTTCGACTCG 577 223 730 Antisense
Sequence Source Affymetrix Proprietary Database