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[190540_s_at]

Description B0035.1A /REP_DB=WormBase Gene ID /WP=CE07665 /TR=Q93156 /GB=CAA97419.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=Zinc finger, C2H2 type
Cluster 6grp_highest_10_10 > 91      6grp_high1_10_10 > 49      4grp_highest_8_8 > 08      4grp_high_8_8 > 53      6grp_highest_nonorm > 86      6grp_total > 39      4grp_total > 51      6grp_high1_sub > Cu      6grp_total_sub > Cup      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1009
1 2 3 4 range
A 1222.7
(-1.6)
P 		1666.6
(3)
P 		1662.5
(3)
P 		1086.1
(-3)
P 		581
B 1462.3
(0.5)
P 		1725.6
(3)
P 		1476.2
(0.6)
P 		1102.7
(-3)
P 		623
C 1385.9
(0.1)
P 		1873.8
(3)
P 		1569
(1.2)
P 		864.7
(-3)
P 		1009
avr 1357
(-0.2) 		1755.3
(3) 		1569.2
(1.5) 		1017.8
(-3) 		738

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 466
1 2 3 4 5 6 range
A 1043.9
(1.4)
P 		1150.8
(3)
P 		758.9
(-3)
P 		989.3
(0.5)
P 		1025.9
(1.1)
P 		1052.3
(1.5)
P 		392
B 927.4
(1)
P 		942.3
(1.4)
P 		756.1
(-3)
P 		855.8
(-0.7)
P 		920.2
(0.8)
P 		1012.7
(3)
P 		257
C 1128.1
(1.4)
P 		873.7
(-3)
P 		1052.8
(0.1)
P 		994
(-0.9)
P 		1222
(3)
P 		969.3
(-1.4)
P 		348
avr 1033.1
(2.3) 		988.9
(1) 		855.9
(-3) 		946.4
(-0.3) 		1056
(3) 		1011.4
(1.7) 		200
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 401
1 2 3 4 range
A 445.2
(3)
P 		361.8
(1.3)
P 		434.6
(2.8)
P 		159
(-3)
P 		286
B 466.3
(3)
P 		426.2
(2)
P 		342.1
(-0.2)
P 		235
(-3)
P 		231
C 458.8
(1.7)
P 		538.7
(2.9)
P 		546.9
(3)
P 		145.8
(-3)
P 		401
avr 456.8
(3) 		442.2
(2.7) 		441.2
(2.7) 		179.9
(-3) 		277

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 253
1 2 3 4 5 6 range
A 192.4
(-2.3)
P 		409.3
(3)
P 		165.3
(-3)
P 		250.9
(-0.9)
P 		309.6
(0.5)
P 		256.2
(-0.8)
P 		244
B 322.7
(1.3)
P 		313.7
(1)
P 		183.6
(-3)
P 		226.7
(-1.7)
P 		373.9
(2.9)
P 		377.6
(3)
P 		194
C 418.1
(3)
P 		266.6
(-1.2)
P 		268
(-1.1)
P 		199.9
(-3)
P 		395.4
(2.4)
P 		324.5
(0.4)
P 		218
avr 311.1
(1.1) 		329.9
(1.8) 		205.6
(-3) 		225.8
(-2.2) 		359.6
(3) 		319.4
(1.4) 		154
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 190540_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8874
Sequence Type Exemplar sequence
Representative Public ID B0035.1A NCBI
Target Description B0035.1A /REP_DB=WormBase Gene ID /WP=CE07665 /TR=Q93156 /GB=CAA97419.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=Zinc finger, C2H2 type
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069723(11), NM_069724(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069723 NCBI Caenorhabditis elegans B0035.1b (B0035.1) mRNA, complete cds. 11/11 A 
NM_069724 NCBI Caenorhabditis elegans B0035.1a (B0035.1) mRNA, complete cds. 11/11 None
SNAP00000035830 ENSEMBL cdna:SNAP chromosome:CEL140:IV:11310971:11312307:1 11/11 None
GENEFINDER00000035859 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:11310971:11312307:1 11/11 None
B0035.1b ENSEMBL cdna:known chromosome:CEL140:IV:11310943:11312468:1 gene:B0035.1 11/11 A 
B0035.1a ENSEMBL cdna:known chromosome:CEL140:IV:11310971:11312077:1 gene:B0035.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:11310976-11312083(+) 100.0 100.0
Public Domain and Genome References
Ensembl B0035.1
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB63428 Hypothetical protein B0035.1b [Caenorhabditis elegans] ref|NP_502124.1| B0035.1b [Caenorhabditis elegans] 4.0E-65
blast CAA97419 Hypothetical protein B0035.1a [Caenorhabditis elegans] ref|NP_502125.1| B0035.1a [Caenorhabditis elegans] 5.0E-61
blast CAB63428 Hypothetical protein B0035.1b [Caenorhabditis elegans] ref|NP_502124.1| B0035.1b [Caenorhabditis elegans] 5.0E-61
blast CAA97419 Hypothetical protein B0035.1a [Caenorhabditis elegans] ref|NP_502125.1| B0035.1a [Caenorhabditis elegans] 6.0E-61
Sequence
Target Sequence 
>C. ELEGANS:190540_S_AT
ggacaatggaccacctatgccaactcctatgcctttcccacagcatttcccatttcctgg
aatgcctcctatgccgtcgggtccaccaccaccgtcaatggcatacggaatgcctccaat
gccatctggtatgatgccacctcgcgggatgccaggagcttatcctccgccacgtggata
ccctccagcgccagctcctggcgtgtatatgcctccgccaggaatgcctggtgcatatcc
tccaccacgtatgccaataggtcatggaccacctggtggcccacccatgcctggtcctcc
tcaaagaagccgatttgatcaacctgacggcggagacaggtggggtccaccaatgcgagg
agtaccacggacgccaccatatgaaaacgagcatgaacatcaagattatcaagctccaga
tgactacaatcaaggaggatacgatgatcggtttagagaaggtgatcgtggaggtccacc
gggaggtagccgatttga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGACAATGGACCACCTATGCCAACT 193 525 327 Antisense
CATTTCCCATTTCCTGGAATGCCTC 441 215 370 Antisense
CACCACCACCGTCAATGGCATACGG 305 201 410 Antisense
ATGCCTCCAATGCCATCTGGTATGA 587 41 436 Antisense
GCGGGATGCCAGGAGCTTATCCTCC 128 293 470 Antisense
CCTGGCGTGTATATGCCTCCGCCAG 649 263 523 Antisense
AGGAATGCCTGGTGCATATCCTCCA 292 55 546 Antisense
CCTCCACCACGTATGCCAATAGGTC 249 267 565 Antisense
ATAGGTCATGGACCACCTGGTGGCC 486 21 583 Antisense
GGGGTCCACCAATGCGAGGAGTACC 596 493 668 Antisense
GTCCACCGGGAGGTAGCCGATTTGA 348 439 800 Antisense
Sequence Source Affymetrix Proprietary Database