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[190538_at]

Description F39H2.1 /REP_DB=WormBase Gene ID /WP=CE10128 /TR=Q93702 /GB=CAB03086.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=Human KIAA0086 ORF like
Cluster 6grp_highest_10_10 > 89      6grp_high1_10_10 > 98      4grp_high_8_8 > 24      6grp_highest_nonorm > 91      6grp_total > 96      4grp_total > 07      6grp_highest_sub > In      6grp_high1_sub > In      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 94
1 2 3 4 range
A 128.7
(3)
P 		35.2
(-3)
A 		50.1
(-2)
P 		77.7
(-0.3)
P 		94
B 70.2
(-0.8)
P 		62.6
(-3)
P 		75.9
(0.9)
P 		83.1
(3)
P 		21
C 77.7
(-3)
P 		85.5
(-1.7)
P 		113.2
(3)
P 		77.7
(-3)
P 		36
avr 92.2
(3) 		61.1
(-3) 		79.7
(0.6) 		79.5
(0.5) 		31

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 271
1 2 3 4 5 6 range
A 82.9
(-3)
P 		93.2
(-2.6)
P 		108.4
(-2.1)
P 		135.6
(-1.2)
P 		180.8
(0.3)
P 		258.4
(3)
P 		176
B 130.7
(-0.9)
P 		55.2
(-3)
P 		107
(-1.6)
P 		176.3
(0.3)
P 		274.9
(3)
P 		245.9
(2.2)
P 		220
C 84.4
(-2.9)
P 		87.7
(-2.9)
P 		81.7
(-3)
P 		141
(-1.5)
P 		223.8
(0.5)
P 		325.9
(3)
P 		244
avr 99.3
(-2.4) 		78.7
(-3) 		99
(-2.4) 		151
(-0.8) 		226.5
(1.5) 		276.7
(3) 		198
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 39
1 2 3 4 range
A 46.9
(3)
P 		7.6
(-3)
A 		13.1
(-2.2)
P 		11.4
(-2.4)
P 		39
B 22.4
(3)
P 		15.5
(-3)
P 		17.6
(-1.2)
P 		17.7
(-1.1)
P 		7
C 25.7
(-0.1)
P 		24.6
(-0.4)
P 		39.5
(3)
P 		13.1
(-3)
P 		26
avr 31.7
(3) 		15.9
(-2.4) 		23.4
(0.2) 		14.1
(-3) 		18

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 96
1 2 3 4 5 6 range
A 15.3
(-3)
P 		33.1
(-0.8)
P 		23.6
(-2)
P 		34.4
(-0.6)
P 		54.6
(2)
P 		62.9
(3)
P 		48
B 45.5
(-1.3)
P 		18.4
(-3)
P 		26
(-2.5)
P 		46.7
(-1.2)
P 		111.7
(3)
P 		91.7
(1.7)
P 		93
C 31.3
(-2.3)
P 		26.8
(-2.6)
P 		20.8
(-3)
P 		28.4
(-2.5)
P 		72.4
(0.5)
P 		109.1
(3)
P 		88
avr 30.7
(-2.3) 		26.1
(-2.8) 		23.5
(-3) 		36.5
(-1.8) 		79.6
(2.2) 		87.9
(3) 		64
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 190538_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1473
Sequence Type Exemplar sequence
Representative Public ID F39H2.1 NCBI
Target Description F39H2.1 /REP_DB=WormBase Gene ID /WP=CE10128 /TR=Q93702 /GB=CAB03086.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=Human KIAA0086 ORF like
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_170903(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_170903 NCBI Caenorhabditis elegans F39H2.5 (F39H2.5) mRNA, complete cds. 11/11 None
SNAP00000006545 ENSEMBL cdna:SNAP chromosome:CEL140:I:8668962:8671184:1 11/11 None
GENEFINDER00000006550 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:8668962:8671184:1 11/11 None
F39H2.5.2 ENSEMBL cdna:known chromosome:CEL140:I:8668945:8671206:1 gene:F39H2.5 11/11 None
F39H2.5.1 ENSEMBL cdna:known chromosome:CEL140:I:8668956:8671206:1 gene:F39H2.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:8666967-8670820(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F39H2.5
Entrez Gene 172666 Entrez gene
SwissProt Q8T3E0 EMBL-EBI
WormBase CE30531 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAD30439 Hypothetical protein F39H2.5 [Caenorhabditis elegans] ref|NP_740895.1| F39H2.5 [Caenorhabditis elegans] 0.0
blast CAE74497 Hypothetical protein CBG22248 [Caenorhabditis briggsae] 1.0E-132
blast CAE74497 Hypothetical protein CBG22248 [Caenorhabditis briggsae] 1.0E-124
Sequence
Target Sequence 
>C. ELEGANS:190538_AT
ggataacacctatttttcattggatatgccgtttcctgaacgatgcgaggcagaaaaaat
actcctgaaggctattgaagcacatccgcatgaaaatattgttattcccttgcatagact
tgggcgtgaagaattgattcaagcaatatctcgaatattgaatgaacccattatggttta
tgatgaaagaaaagttatttcagatttattagacttttcatcaaactgtggagttttgaa
acagtatcgagatattaaagttatcaaaaaaggaagctattgtgaaatatctcaaaattc
ggtgataatcgacatatcgatgctctattatacgtttggaaatggtgtcaacgacgacga
gggaatcattagaattccatattccgaccactcttcaagaagtgaaattcttaaatttct
cagtcattttcacttta

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGATAACACCTATTTTTCATTGGAT 520 511 1239 Antisense
TTTCATTGGATATGCCGTTTCCTGA 391 671 1253 Antisense
GCCGTTTCCTGAACGATGCGAGGCA 418 283 1266 Antisense
GGCTATTGAAGCACATCCGCATGAA 156 539 1308 Antisense
AATATTGTTATTCCCTTGCATAGAC 153 175 1333 Antisense
CCCTTGCATAGACTTGGGCGTGAAG 553 251 1345 Antisense
TTAGACTTTTCATCAAACTGTGGAG 16 683 1447 Antisense
ATCGATGCTCTATTATACGTTTGGA 677 33 1554 Antisense
GAAATGGTGTCAACGACGACGAGGG 553 359 1577 Antisense
ATATTCCGACCACTCTTCAAGAAGT 18 19 1617 Antisense
AAATTTCTCAGTCATTTTCACTTTA 688 113 1651 Antisense
Sequence Source Affymetrix Proprietary Database