[Home] | [Total List]

[190537_at] C2H2-type zinc fingers

Description F47E1.3 /REP_DB=WormBase Gene ID /WP=CE04602 /TR=Q20537 /GB=AAA81086.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation /DEF=C2H2-type zinc fingers
Cluster 6grp_total > 09      4grp_total > 23      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 98
1 2 3 4 range
A 83
(2.3)
A 		70.4
(0.4)
A 		47.6
(-3)
A 		87.5
(3)
A 		40
B 128.7
(3)
A 		77.3
(-3)
A 		96.4
(-0.8)
A 		83
(-2.3)
A 		51
C 129.5
(2)
A 		53.1
(-3)
A 		53.4
(-3)
A 		145.2
(3)
P 		92
avr 113.7
(3) 		66.9
(-2.9) 		65.8
(-3) 		105.2
(1.9) 		48

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 147
1 2 3 4 5 6 range
A 152.7
(3)
A 		17.9
(-3)
A 		83.7
(-0.1)
P 		41.9
(-1.9)
A 		42.3
(-1.9)
A 		45.1
(-1.8)
A 		135
B 8.3
(-3)
A 		83.7
(3)
A 		32.2
(-1.1)
A 		65
(1.5)
A 		56.6
(0.8)
A 		17.5
(-2.3)
A 		75
C 97.5
(2.9)
A 		63.6
(0.7)
A 		8.6
(-2.8)
A 		99.7
(3)
A 		5.9
(-3)
A 		41.3
(-0.7)
A 		94
avr 86.2
(3) 		55.1
(-0.6) 		41.5
(-2.2) 		68.9
(1) 		34.9
(-3) 		34.6
(-3) 		52
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 30
1 2 3 4 range
A 30.2
(3)
A 		15.3
(-2.1)
A 		12.5
(-3)
A 		12.8
(-2.9)
A 		18
B 41
(3)
A 		19.1
(-2.6)
A 		22.3
(-1.8)
A 		17.7
(-3)
A 		23
C 42.9
(3)
A 		15.3
(-3)
A 		18.6
(-2.3)
A 		24.5
(-1)
P 		28
avr 38
(3) 		16.6
(-3) 		17.8
(-2.7) 		18.3
(-2.5) 		21

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 34
1 2 3 4 5 6 range
A 28.1
(3)
A 		6.4
(-3)
A 		18.2
(0.3)
P 		10.6
(-1.8)
A 		12.8
(-1.2)
A 		11
(-1.7)
A 		22
B 2.9
(-3)
A 		27.9
(3)
A 		7.8
(-1.8)
A 		17.2
(0.4)
A 		23
(1.8)
A 		6.5
(-2.1)
A 		25
C 36.1
(3)
A 		19.4
(0.1)
A 		2.2
(-2.9)
A 		20
(0.2)
A 		1.9
(-3)
A 		13.8
(-0.9)
A 		34
avr 22.4
(3) 		17.9
(0.9) 		9.4
(-3) 		15.9
(0) 		12.6
(-1.5) 		10.4
(-2.5) 		13
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 190537_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16611
Sequence Type Exemplar sequence
Representative Public ID F47E1.3 NCBI
Target Description F47E1.3 /REP_DB=WormBase Gene ID /WP=CE04602 /TR=Q20537 /GB=AAA81086.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation /DEF=C2H2-type zinc fingers
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077129(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077129 NCBI Caenorhabditis elegans F47E1.3 (F47E1.3) mRNA, complete cds. 11/11 None
F47E1.3 ENSEMBL cdna:known chromosome:CEL140:X:9046148:9052657:1 gene:F47E1.3 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000035131 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:9046146-9052656(+) 100.0 100.0
Public Domain and Genome References
Gene Title C2H2-type zinc fingers
Ensembl F47E1.3
Entrez Gene 185936 Entrez gene
SwissProt Q20537 EMBL-EBI
WormBase CE04602 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
5634 nucleus inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3676 nucleic acid binding inferred from electronic annotation QuickGO AmiGO
8270 zinc ion binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAA81086 Hypothetical protein F47E1.3 [Caenorhabditis elegans] ref|NP_509530.1| F47E1.3 [Caenorhabditis elegans] 0.0
blast CAE57288 Hypothetical protein CBG00197 [Caenorhabditis briggsae] 2.0E-89
blast AAP69779 Prmd14 [Danio rerio] 3.0E-53
Protein Domains
Database ID Description E-Value
Pfam IPR007087 EMBL-EBI Zn-finger, C2H2 type 6.0E-7
Sequence
Target Sequence 
>C. ELEGANS:190537_AT
gaaccaatcttgagttgcctgatgcatggtggcgtttcgccaaggagagtagtcattcgg
caaacattgtacattcaaaagtagtgactgacattgcatgtggggccgagatagtcatca
gtcgaacaccaacagaagacagaaaatcagaagttgaagagcctgagatcatagatgatg
tggcgaagaaaaatgagaacgtgtcaaatggattttcatgtgaacggtgtgggaaagttt
tcagttacgagtactaccgagacaagcacttgaagtacacaagatgtgtggataatggga
atcgaaagttcccgtgcactatttgcaacaggtcttttgaaaaacgcgatcgactgcgta
tccacattcttcacgtccacgagaaccaccgtcctcatgtttgctccgtgtgccaaaaat
ccttcagccagtccagtagtctgaataagcacctacgagttcactctggtgaacgcccgt
ataaatgttcattctgcccaaaagctttcactgcatcttcaattctgcggacacatg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAACCAATCTTGAGTTGCCTGATGC 494 345 1187 Antisense
GCCTGATGCATGGTGGCGTTTCGCC 526 283 1203 Antisense
GAGATAGTCATCAGTCGAACACCAA 181 395 1294 Antisense
TCGAAAGTTCCCGTGCACTATTTGC 650 601 1488 Antisense
AACGCGATCGACTGCGTATCCACAT 437 145 1529 Antisense
TCCGTGTGCCAAAAATCCTTCAGCC 506 593 1591 Antisense
TCCTTCAGCCAGTCCAGTAGTCTGA 345 589 1606 Antisense
AATAAGCACCTACGAGTTCACTCTG 524 171 1630 Antisense
TCACTCTGGTGAACGCCCGTATAAA 450 627 1647 Antisense
CCCAAAAGCTTTCACTGCATCTTCA 3 259 1683 Antisense
GCATCTTCAATTCTGCGGACACATG 507 309 1699 Antisense
Sequence Source Affymetrix Proprietary Database